PDB entry 6cug

View 6cug on RCSB PDB site
Description: Crystal structure of BC8B TCR-CD1b-PC complex
Class: immune system
Keywords: T cell receptor, antigen presenting molecule, CD1b, PC, phosphatidylcholine, IMMUNE SYSTEM
Deposited on 2018-03-26, released 2019-01-16
The last revision prior to the SCOPe 2.07 freeze date was dated 2019-01-16, with a file datestamp of 2019-01-11.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: T-cell surface glycoprotein cd1b
    Species: Homo sapiens [TaxId:9606]
    Gene: CD1B
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6cuga1, d6cuga2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6cugb_
  • Chain 'D':
    Compound: T-cell receptor alpha variable TRAV9-2 - BC8B TCR
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6CUG (0-End)
    Domains in SCOPe 2.07: d6cugd1, d6cugd2
  • Chain 'E':
    Compound: T-cell receptor beta variable TRBV6-2 - BC8B TCR
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6CUG (Start-244)
    Domains in SCOPe 2.07: d6cuge1, d6cuge2
  • Heterogens: NAG, CUY, POV, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >6cugA (A:)
    hafqgptsfhviqtssftnstwaqtqgsgwlddlqihgwdsdsgtaiflkpwskgnfsdk
    evaeleeifrvyifgfarevqdfagdfqmkypfeiqgiagcelhsggaivsflrgalggl
    dflsvknascvpspeggsraqkfcaliiqyqgimetvrillyetcpryllgvlnagkadl
    qrqvkpeawlssgpspgpgrlqlvchvsgfypkpvwvmwmrgeqeqqgtqlgdilpnanw
    twylratldvadgeaaglscrvkhsslegqdiilywrgsglndifeaqkiewhehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >6cugA (A:)
    afqgptsfhviqtssftnstwaqtqgsgwlddlqihgwdsdsgtaiflkpwskgnfsdke
    vaeleeifrvyifgfarevqdfagdfqmkypfeiqgiagcelhsggaivsflrgalggld
    flsvknascvpspeggsraqkfcaliiqyqgimetvrillyetcpryllgvlnagkadlq
    rqvkpeawlssgpspgpgrlqlvchvsgfypkpvwvmwmrgeqeqqgtqlgdilpnanwt
    wylratldvadgeaaglscrvkhsslegqdiilywr
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >6cugB (B:)
    iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
    sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
    

    Sequence, based on observed residues (ATOM records): (download)
    >6cugB (B:)
    iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
    sfyllyyteftptekdeyacrvnhvtlsqpkivkwdr
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >6cugD (D:)
    gnsvtqmegpvtlseeafltinctytatgypslfwyvqypgeglqlllkatkaddkgsnk
    gfeatyrkettsfhlekgsvqvsdsavyfcaltpsggyqkvtfgtgtklqvipniqnpdp
    avyqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsn
    ksdfacanafnnsiipedtffpspess
    

    Sequence, based on observed residues (ATOM records): (download)
    >6cugD (D:)
    gnsvtqmegpvtlseeafltinctytatgypslfwyvqypgeglqlllkatkaddkgsnk
    gfeatyrkettsfhlekgsvqvsdsavyfcaltpsggyqkvtfgtgtklqvipniqnpdp
    avyqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsn
    kdfaca
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >6cugE (E:)
    nagvtqtpkfrvlktgqsmtllcaqdmnheymywyrqdpgmglrlihysvgegttakgev
    pdgynvsrlkkqnfllglesaapsqtsvyfcassmpglrssyeqyfgpgtrltvtedlkn
    vfppevavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplke
    qpalndsryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaea
    wgrad
    

    Sequence, based on observed residues (ATOM records): (download)
    >6cugE (E:)
    agvtqtpkfrvlktgqsmtllcaqdmnheymywyrqdpgmglrlihysvgegttakgevp
    dgynvsrlkkqnfllglesaapsqtsvyfcassmpglrssyeqyfgpgtrltvtedlknv
    fppevavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplkeq
    palndsryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeaw
    grad