PDB entry 6c5k

View 6c5k on RCSB PDB site
Description: S25-23 Fab in complex with Chlamydiaceae LPS (Crystal form 2)
Class: sugar binding protein
Keywords: Carbohydrate, Lipopolysaccharide, Antibody, Antigen, Complex, Chlamydia, SUGAR BINDING PROTEIN
Deposited on 2018-01-16, released 2019-01-09
The last revision prior to the SCOPe 2.07 freeze date was dated 2019-01-09, with a file datestamp of 2019-01-04.
Experiment type: XRAY
Resolution: 1.75 Å
R-factor: N/A
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: IgG1 Fab Heavy Chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6C5K (0-102)
    • Uniprot Q99LC4 (102-217)
  • Chain 'B':
    Compound: IgG1 Fab Light Chain (Kappa)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6c5kb1, d6c5kb2
  • Chain 'H':
    Compound: IgG1 Fab Heavy Chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6C5K (0-102)
    • Uniprot Q99LC4 (102-217)
  • Chain 'L':
    Compound: IgG1 Fab Light Chain (Kappa)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6c5kl1, d6c5kl2
  • Heterogens: NAG, FUC, GP1, Z9M, KDO, NO3, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >6c5kB (B:)
    dvlmtqtplslpvslgdqasiscrssqtivhkngntylewylqkpgqspklliykvsnrf
    sgvpdrfsgsgsgtdftlkisrveaadlgvyycfqgshvpytfgggtkleikradaaptv
    sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
    sstltltkdeyerhnsytceathktstspivksfnrnec
    

  • Chain 'H':
    No sequence available.

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download)
    >6c5kL (L:)
    dvlmtqtplslpvslgdqasiscrssqtivhkngntylewylqkpgqspklliykvsnrf
    sgvpdrfsgsgsgtdftlkisrveaadlgvyycfqgshvpytfgggtkleikradaaptv
    sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
    sstltltkdeyerhnsytceathktstspivksfnrnec