PDB entry 6c5h

View 6c5h on RCSB PDB site
Description: S25-5 Fab in complex with Chlamydiaceae-specific LPS antigen
Class: immune system, sugar binding protein
Keywords: Complex, Lipopolysaccharide, Antibody, Antigen, Chlamydia, SUGAR BINDING PROTEIN, IMMUNE SYSTEM
Deposited on 2018-01-16, released 2019-01-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 1.99 Å
R-factor: N/A
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'H':
    Compound: Fab Heavy Chain (IgG1)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6C5H (0-102)
    • Uniprot Q99LC4 (102-217)
    Domains in SCOPe 2.08: d6c5hh_
  • Chain 'L':
    Compound: Fab Light Chain (IgG1 Kappa)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6c5hl1, d6c5hl2
  • Heterogens: PG4, PEG, TAM, CL, HOH

PDB Chain Sequences:

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6c5hH (H:)
evqlvesgpglvqpsqslsitctvsgfslstygvhwvrqspgkglewlgviwsggstdyn
aafisrlsitkdnsksqvffkmnslqpndtavyycdrmrittdwfaywgqgtlvtvsaak
ttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdly
tlsssvtvpsstwpsetvtcnvahpasstkvdkkivpr

    Sequence, based on observed residues (ATOM records): (download) 
    >6c5hH (H:)
evqlvesgpglvqpsqslsitctvsgfslstygvhwvrqspgkglewlgviwsggstdyn
aafisrlsitkdnsksqvffkmnslqpndtavyycdrmrittdwfaywgqgtlvtvsaak
ttppsvyplapgssmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlsss
vtvpsstwpsetvtcnvahpasstkvdkkivpr

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >6c5hL (L:)
dvlmtqsplslpvslgdqasiscrssqtivhsngntylewylqkpgqspklliykvsnrf
ygvpdrfsgsgsgtdftlkisrveaedlgvyycfqgshvpytfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnrnec

    Sequence, based on observed residues (ATOM records): (download) 
    >6c5hL (L:)
dvlmtqsplslpvslgdqasiscrssqtivhsngntylewylqkpgqspklliykvsnrf
ygvpdrfsgsgsgtdftlkisrveaedlgvyycfqgshvpytfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnr