PDB entry 6bpc

View 6bpc on RCSB PDB site
Description: Plasmodium vivax reticulocyte binding protein 2b (PvRBP2b) bound to monoclonal antibody 4F7
Class: cell invasion
Keywords: Plasmodium vivax, invasion, malaria, antibody complex, CELL INVASION
Deposited on 2017-11-22, released 2018-06-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-07-18, with a file datestamp of 2018-07-13.
Experiment type: XRAY
Resolution: 2.66 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Reticulocyte binding protein 2, putative
    Species: Plasmodium vivax (strain Salvador I) [TaxId:126793]
    Gene: PVX_094255
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Monoclonal antibody 4F7 Fab heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6BPC
    Domains in SCOPe 2.08: d6bpcb_
  • Chain 'C':
    Compound: Monoclonal antibody 4F7 Fab light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6BPC
    Domains in SCOPe 2.08: d6bpcc1, d6bpcc2
  • Chain 'D':
    Compound: Reticulocyte binding protein 2, putative
    Species: Plasmodium vivax (strain Salvador I) [TaxId:126793]
    Gene: PVX_094255
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Monoclonal antibody 4F7 Fab heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6BPC
    Domains in SCOPe 2.08: d6bpce_
  • Chain 'F':
    Compound: Monoclonal antibody 4F7 Fab light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6BPC
    Domains in SCOPe 2.08: d6bpcf1, d6bpcf2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6bpcB (B:)
myfrlssvflililkgvqcevklvesegglvqpgssmkfsctasgftfsdyymawvrqvp
gkglewvaninydgstpdyldslksrfiisrdnaknilylqmsslksedtatyycaretv
vgsfdywgqgttltvssakttapsvyplapvcgdttgssvtlgclvkgyfpepvtltwns
gslssgvhtfpavlqsdlytlsssvtvtsstwpsqsitcnvahpasstkvdkkieprgpt
ikpcppckcpapns

    Sequence, based on observed residues (ATOM records): (download) 
    >6bpcB (B:)
evklvesegglvqpgssmkfsctasgftfsdyymawvrqvpgkglewvaninydgstpdy
ldslksrfiisrdnaknilylqmsslksedtatyycaretvvgsfdywgqgttltvssak
ttapsvyplapvgssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdlytlsss
vtvtsstwpsqsitcnvahpasstkvdkkiepr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6bpcC (C:)
mgikmesqtqvfvymllwlsgvdgdivmtqsqkfmstsvgdrvsvtckasqnvgtnvawy
qqkpgqspkaliysasyrysgvpdrftgsgsgtdftltinnvqsedlayfcqqynsypyt
fgggtkleikradaaptvsifppsseqltsggasvvcflnnfypkdinvkwkidgserqn
gvlnswtdqdskdstysmsstltltkdeyerhnsytceathktstspivksfnrnec

    Sequence, based on observed residues (ATOM records): (download) 
    >6bpcC (C:)
gdivmtqsqkfmstsvgdrvsvtckasqnvgtnvawyqqkpgqspkaliysasyrysgvp
drftgsgsgtdftltinnvqsedlayfcqqynsypytfgggtkleikradaaptvsifpp
sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
ltkdeyerhnsytceathktstspivksfnrn

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6bpcE (E:)
myfrlssvflililkgvqcevklvesegglvqpgssmkfsctasgftfsdyymawvrqvp
gkglewvaninydgstpdyldslksrfiisrdnaknilylqmsslksedtatyycaretv
vgsfdywgqgttltvssakttapsvyplapvcgdttgssvtlgclvkgyfpepvtltwns
gslssgvhtfpavlqsdlytlsssvtvtsstwpsqsitcnvahpasstkvdkkieprgpt
ikpcppckcpapns

    Sequence, based on observed residues (ATOM records): (download) 
    >6bpcE (E:)
evklvesegglvqpgssmkfsctasgftfsdyymawvrqvpgkglewvaninydgstpdy
ldslksrfiisrdnaknilylqmsslksedtatyycaretvvgsfdywgqgttltvssak
ttapsvyplapgssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdlytlsssv
tvtsstwpsqsitcnvahpasstkvdkkiepr

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6bpcF (F:)
mgikmesqtqvfvymllwlsgvdgdivmtqsqkfmstsvgdrvsvtckasqnvgtnvawy
qqkpgqspkaliysasyrysgvpdrftgsgsgtdftltinnvqsedlayfcqqynsypyt
fgggtkleikradaaptvsifppsseqltsggasvvcflnnfypkdinvkwkidgserqn
gvlnswtdqdskdstysmsstltltkdeyerhnsytceathktstspivksfnrnec

    Sequence, based on observed residues (ATOM records): (download) 
    >6bpcF (F:)
divmtqsqkfmstsvgdrvsvtckasqnvgtnvawyqqkpgqspkaliysasyrysgvpd
rftgsgsgtdftltinnvqsedlayfcqqynsypytfgggtkleikradaaptvsifpps
seqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstltl
tkdeyerhnsytceathktstspivksfnrn