PDB entry 6bmk

View 6bmk on RCSB PDB site
Description: Crystal structure of MHC-I like protein
Class: immune system
Keywords: Major Histocompatibility complex, MHC-I, CD1d, antigen, IMMUNE SYSTEM
Deposited on 2017-11-15, released 2018-01-31
The last revision prior to the SCOPe 2.07 freeze date was dated 2018-03-07, with a file datestamp of 2018-03-02.
Experiment type: XRAY
Resolution: 2.43 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Antigen-presenting glycoprotein CD1d2
    Species: Mus musculus [TaxId:10090]
    Gene: Cd1d2, Cd1.2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11610 (Start-275)
      • conflict (42)
    Domains in SCOPe 2.07: d6bmka1, d6bmka2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Mus musculus [TaxId:10090]
    Gene: B2M
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6bmkb_
  • Chain 'C':
    Compound: Antigen-presenting glycoprotein CD1d2
    Species: Mus musculus [TaxId:10090]
    Gene: Cd1d2, Cd1.2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11610 (Start-275)
      • conflict (42)
    Domains in SCOPe 2.07: d6bmkc1, d6bmkc2
  • Chain 'D':
    Compound: Beta-2-microglobulin
    Species: Mus musculus [TaxId:10090]
    Gene: B2M
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6bmkd_
  • Heterogens: NAG, F57, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >6bmkA (A:)
    qqknytfrclqtssfaniswsrtdslillgdlqthrwsndsaiisftkpwsqgklsnqqw
    eklqhmfqvyrvsftrdiqelvkmmspkedypieiqlstgcemypgnasesffhvafqgk
    yavrfrgtswqrvlgapswldlpikvlnadqgtsatvqtllndtwpqfarglleagksdl
    ekqekpvawlssvpssahghlqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnade
    twylqatldveageeaglacrvkhsslggqdiilyw
    

    Sequence, based on observed residues (ATOM records): (download)
    >6bmkA (A:)
    ytfrclqtssfaniswsrtdslillgdlqthrwsndsaiisftkpwsqgklsnqqweklq
    hmfqvyrvsftrdiqelvkmmspkedypieiqlstgcemypgnasesffhvafqgkyavr
    frgtswqrvlgapswldlpikvlnadqgtsatvqtllndtwpqfarglleagksdlekqe
    kpvawlssvpssahghlqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnadetwyl
    qatldveageeaglacrvkhsslggqdiilyw
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >6bmkB (B:)
    iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
    sfyilahteftptetdtyacrvkhasmaepktvywdrdm
    

    Sequence, based on observed residues (ATOM records): (download)
    >6bmkB (B:)
    qktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdws
    fyilahteftptetdtyacrvkhasmaepktvywdrdm
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >6bmkC (C:)
    qqknytfrclqtssfaniswsrtdslillgdlqthrwsndsaiisftkpwsqgklsnqqw
    eklqhmfqvyrvsftrdiqelvkmmspkedypieiqlstgcemypgnasesffhvafqgk
    yavrfrgtswqrvlgapswldlpikvlnadqgtsatvqtllndtwpqfarglleagksdl
    ekqekpvawlssvpssahghlqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnade
    twylqatldveageeaglacrvkhsslggqdiilyw
    

    Sequence, based on observed residues (ATOM records): (download)
    >6bmkC (C:)
    ytfrclqtssfaniswsrtdslillgdlqthrwsndsaiisftkpwsqgklsnqqweklq
    hmfqvyrvsftrdiqelvkmmspkedypieiqlstgcemypgnasesffhvafqgkyavr
    frgtswqrvlgapswldlpikvlnadqgtsatvqtllndtwpqfarglleagksdlekqe
    kpvawlssvpssahghlqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnadetwyl
    qatldveageeaglacrvkhsslggqdiilyw
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >6bmkD (D:)
    iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
    sfyilahteftptetdtyacrvkhasmaepktvywdrdm
    

    Sequence, based on observed residues (ATOM records): (download)
    >6bmkD (D:)
    qktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdws
    fyilahteftptetdtyacrvkhasmaepktvywdrdm