PDB entry 6bft
View 6bft on RCSB PDB site
Description: Structure of Bevacizumab Fab mutant in complex with VEGF
Class: immune system
Keywords: Avastin, antibody, IMMUNE SYSTEM
Deposited on
2017-10-27, released
2018-10-31
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-01-01, with a file datestamp of
2019-12-27.
Experiment type: XRAY
Resolution: 2.55 Å
R-factor: N/A
AEROSPACI score: 0.2
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Avastin Heavy Chain Fab fragment mutant
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 6BFT (0-122)
- Uniprot P0DOX5 (123-End)
- Chain 'B':
Compound: Avastin Light Chain Fab fragment mutant
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 6BFT (0-103)
- Uniprot Q8TCD0 (104-213)
Domains in SCOPe 2.08: d6bftb1, d6bftb2 - Chain 'C':
Compound: Vascular Endothelial Growth Factor A
Species: Homo sapiens [TaxId:9606]
Gene: VEGFA, VEGF
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6bftc_ - Chain 'G':
Compound: Vascular Endothelial Growth Factor A
Species: Homo sapiens [TaxId:9606]
Gene: VEGFA, VEGF
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6bftg_ - Chain 'H':
Compound: Avastin Heavy Chain Fab fragment mutant
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 6BFT (0-122)
- Uniprot P0DOX5 (123-End)
- Chain 'L':
Compound: Avastin Light Chain Fab fragment mutant
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 6BFT (0-103)
- Uniprot Q8TCD0 (104-End)
Domains in SCOPe 2.08: d6bftl1, d6bftl2 - Heterogens: SO4, MES, HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>6bftB (B:)
diqmtqspsslsasvgdrvtitcsasqdisnylnwyqqkpgkapkvliyftddlhsgvps
rfsgsgsgtdftltisslqpedfatyycqqystvpwtfgqgtkveikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrgec
- Chain 'C':
Sequence, based on SEQRES records: (download)
>6bftC (C:)
gpnhhevvkfmdvyqrsychpietlvdifqeypdeieyifkpscvplmrcggccndegle
cvpteesnitmqimrikphqgqhigemsflqhnkcecrpkkd
Sequence, based on observed residues (ATOM records): (download)
>6bftC (C:)
vvkfmdvyqrsychpietlvdifqeypdeieyifkpscvplmrcggccndeglecvptee
snitmqimrikphqgqhigemsflqhnkcecrpk
- Chain 'G':
Sequence, based on SEQRES records: (download)
>6bftG (G:)
gpnhhevvkfmdvyqrsychpietlvdifqeypdeieyifkpscvplmrcggccndegle
cvpteesnitmqimrikphqgqhigemsflqhnkcecrpkkd
Sequence, based on observed residues (ATOM records): (download)
>6bftG (G:)
evvkfmdvyqrsychpietlvdifqeypdeieyifkpscvplmrcggccndeglecvpte
esnitmqimrikphqgqhigemsflqhnkcecrpk
- Chain 'H':
No sequence available.
- Chain 'L':
Sequence, based on SEQRES records: (download)
>6bftL (L:)
diqmtqspsslsasvgdrvtitcsasqdisnylnwyqqkpgkapkvliyftddlhsgvps
rfsgsgsgtdftltisslqpedfatyycqqystvpwtfgqgtkveikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrgec
Sequence, based on observed residues (ATOM records): (download)
>6bftL (L:)
diqmtqspsslsasvgdrvtitcsasqdisnylnwyqqkpgkapkvliyftddlhsgvps
rfsgsgsgtdftltisslqpedfatyycqqystvpwtfgqgtkveikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrge