PDB entry 6ba0

View 6ba0 on RCSB PDB site
Description: Pyrimidine-specific Ribonucleoside Hydrolase from Gardnerella vaginalis
Class: hydrolase
Keywords: Nucleoside hydrolase, Nitrogen metabolism, HYDROLASE
Deposited on 2017-10-11, released 2018-10-17
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-01-08, with a file datestamp of 2020-01-03.
Experiment type: XRAY
Resolution: 2.03 Å
R-factor: N/A
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Cytidine/uridine-specific hydrolase
    Species: Gardnerella vaginalis 315-A [TaxId:879307]
    Gene: rihA, HMPREF9435_0920
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6ba0a_
  • Chain 'B':
    Compound: Cytidine/uridine-specific hydrolase
    Species: Gardnerella vaginalis 315-A [TaxId:879307]
    Gene: rihA, HMPREF9435_0920
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6ba0b_
  • Chain 'C':
    Compound: Cytidine/uridine-specific hydrolase
    Species: Gardnerella vaginalis 315-A [TaxId:879307]
    Gene: rihA, HMPREF9435_0920
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6ba0c_
  • Chain 'D':
    Compound: Cytidine/uridine-specific hydrolase
    Species: Gardnerella vaginalis 315-A [TaxId:879307]
    Gene: rihA, HMPREF9435_0920
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6ba0d_
  • Heterogens: CA, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6ba0A (A:)
gshmttiildcdpghddamaillalgnpnidllgvttvggnqslekvtynaratlemaha
tnipvhagcdrpmirplevaaavhgetgldgvtlpeptrpldeghavnwiidtimshepg
titlvptgpltniamavrleprivsrvkevvlmgggyhvgnwsavaefnikvdpeaahvv
fnedwpitmvgldlthqalctpevqaridaigtplsafasglmdffrkayknnqdfidpp
vhdpctvaylidhsvvqtrrcpvdveikgdltlgmtvadlrgpepsadkchtqvatkldf
nkfwdliidalkelk

    Sequence, based on observed residues (ATOM records): (download) 
    >6ba0A (A:)
mttiildcdpghddamaillalgnpnidllgvttvggnqslekvtynaratlemahatni
pvhagcdrpmirplevaaavhgetgldgvtlpeptrpldeghavnwiidtimshepgtit
lvptgpltniamavrleprivsrvkevvlmgggyhvgnwsavaefnikvdpeaahvvfne
dwpitmvgldlthqalctpevqaridaigtplsafasglmdffrkayknnqdfidppvhd
pctvaylidhsvvqtrrcpvdveikgdltlgmtvadlrgpepsadkchtqvatkldfnkf
wdliidalkelk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6ba0B (B:)
gshmttiildcdpghddamaillalgnpnidllgvttvggnqslekvtynaratlemaha
tnipvhagcdrpmirplevaaavhgetgldgvtlpeptrpldeghavnwiidtimshepg
titlvptgpltniamavrleprivsrvkevvlmgggyhvgnwsavaefnikvdpeaahvv
fnedwpitmvgldlthqalctpevqaridaigtplsafasglmdffrkayknnqdfidpp
vhdpctvaylidhsvvqtrrcpvdveikgdltlgmtvadlrgpepsadkchtqvatkldf
nkfwdliidalkelk

    Sequence, based on observed residues (ATOM records): (download) 
    >6ba0B (B:)
mttiildcdpghddamaillalgnpnidllgvttvggnqslekvtynaratlemahatni
pvhagcdrpmirplevaaavhgetgldgvtlpeptrpldeghavnwiidtimshepgtit
lvptgpltniamavrleprivsrvkevvlmgggyhvgnwsavaefnikvdpeaahvvfne
dwpitmvgldlthqalctpevqaridaigtplsafasglmdffrkayknnqdfidppvhd
pctvaylidhsvvqtrrcpvdveikgdltlgmtvadlrgpepsadkchtqvatkldfnkf
wdliidalkelk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6ba0C (C:)
gshmttiildcdpghddamaillalgnpnidllgvttvggnqslekvtynaratlemaha
tnipvhagcdrpmirplevaaavhgetgldgvtlpeptrpldeghavnwiidtimshepg
titlvptgpltniamavrleprivsrvkevvlmgggyhvgnwsavaefnikvdpeaahvv
fnedwpitmvgldlthqalctpevqaridaigtplsafasglmdffrkayknnqdfidpp
vhdpctvaylidhsvvqtrrcpvdveikgdltlgmtvadlrgpepsadkchtqvatkldf
nkfwdliidalkelk

    Sequence, based on observed residues (ATOM records): (download) 
    >6ba0C (C:)
mttiildcdpghddamaillalgnpnidllgvttvggnqslekvtynaratlemahatni
pvhagcdrpmirplevgldgvtlpeptrpldeghavnwiidtimshepgtitlvptgplt
niamavrleprivsrvkevvlmgggyhvgnwsavaefnikvdpeaahvvfnedwpitmvg
ldlthqalctpevqaridaigtplsafasglmdffrkayknnqdfidppvhdpctvayli
dhsvvqtrrcpvdveikgdltlgmtvadlrgpepsadkchtqvatkldfnkfwdliidal
kelk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6ba0D (D:)
gshmttiildcdpghddamaillalgnpnidllgvttvggnqslekvtynaratlemaha
tnipvhagcdrpmirplevaaavhgetgldgvtlpeptrpldeghavnwiidtimshepg
titlvptgpltniamavrleprivsrvkevvlmgggyhvgnwsavaefnikvdpeaahvv
fnedwpitmvgldlthqalctpevqaridaigtplsafasglmdffrkayknnqdfidpp
vhdpctvaylidhsvvqtrrcpvdveikgdltlgmtvadlrgpepsadkchtqvatkldf
nkfwdliidalkelk

    Sequence, based on observed residues (ATOM records): (download) 
    >6ba0D (D:)
mttiildcdpghddamaillalgnpnidllgvttvggnqslekvtynaratlemahatni
pvhagcdrpmirplevgldgvtlpeptrpldeghavnwiidtimshepgtitlvptgplt
niamavrleprivsrvkevvlmgggyhvgnwsavaefnikvdpeaahvvfnedwpitmvg
ldlthqalctpevqaridaigtplsafasglmdffrkayknnqdfidppvhdpctvayli
dhsvvqtrrcpvdveikgdltlgmtvadlrgpepsadkchtqvatkldfnkfwdliidal
kelk