PDB entry 6aov

View 6aov on RCSB PDB site
Description: Crystal structure of the A/Brisbane/10/2007 (H3N2) influenza virus hemagglutinin in complex with 6'-SLNLN
Class: viral protein
Keywords: Influenza A virus, hemagglutinin, mutant, receptor binding, antigenicity, VIRAL PROTEIN
Deposited on 2017-08-16, released 2017-10-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 1.75 Å
R-factor: N/A
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin HA1 chain
    Species: Influenza A virus [TaxId:476294]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot A8W891 (4-End)
      • expression tag (2-3)
      • variant (187)
    Domains in SCOPe 2.08: d6aova1, d6aova2
  • Chain 'B':
    Compound: Hemagglutinin HA2 chain
    Species: Influenza A virus (A/Brisbane/10/2007(H3N2)) [TaxId:476294]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6aovb_
  • Heterogens: NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6aovA (A:)
anpgatlclghhavpngtivktitndqievtnatelvqssstgeicdsphqildgenctl
idallgdpqcdgfqnkkwdlfverskaysncypydvpdyaslrslvassgtlefnnesfn
wtgvtqngtssacirrsnnsffsrlnwlthlkfkypalnvtmpnnekfdklyiwgvhhpg
tdndqiflyaqasgritvstkrsqqtvipnigsrprvrnipsrisiywtivkpgdillin
stgnliaprgyfkirsgkssimrsdapigkcnsecitpngsipndkpfqnvnritygacp
ryvkqntlklatgmrnvpekqtr

    Sequence, based on observed residues (ATOM records): (download) 
    >6aovA (A:)
pgatlclghhavpngtivktitndqievtnatelvqssstgeicdsphqildgenctlid
allgdpqcdgfqnkkwdlfverskaysncypydvpdyaslrslvassgtlefnnesfnwt
gvtqngtssacirrsnnsffsrlnwlthlkfkypalnvtmpnnekfdklyiwgvhhpgtd
ndqiflyaqasgritvstkrsqqtvipnigsrprvrnipsrisiywtivkpgdillinst
gnliaprgyfkirsgkssimrsdapigkcnsecitpngsipndkpfqnvnritygacpry
vkqntlklatgmrnvpe

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6aovB (B:)
gifgaiagfiengwegmvdgwygfrhqnsegigqaadlkstqaaidqingklnrligktn
ekfhqiekefsevegriqdlekyvedtkidlwsynaellvalenqhtidltdsemnklfe
ktkkqlrenaedmgngcfkiyhkcdnacigsirngtydhdvyrdealnnrfqik

    Sequence, based on observed residues (ATOM records): (download) 
    >6aovB (B:)
gifgaiagfiengwegmvdgwygfrhqnsegigqaadlkstqaaidqingklnrligktn
ekfhqiekefsevegriqdlekyvedtkidlwsynaellvalenqhtidltdsemnklfe
ktkkqlrenaedmgngcfkiyhkcdnacigsirngtydhdvyrdealnnrfqi