PDB entry 6aks

View 6aks on RCSB PDB site
Description: Cryo-EM structure of CVA10 mature virus
Class: virus
Keywords: picornavirus uncoating, receptor binding, VIRUS
Deposited on 2018-09-03, released 2019-01-16
The last revision prior to the SCOPe 2.07 freeze date was dated 2019-01-16, with a file datestamp of 2019-01-11.
Experiment type: EM
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: vp1
    Species: Coxsackievirus A10 [TaxId:42769]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6aksa_
  • Chain 'B':
    Compound: vp2
    Species: Coxsackievirus A10 [TaxId:42769]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6aksb_
  • Chain 'C':
    Compound: vp3
    Species: Coxsackievirus A10 [TaxId:42769]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6aksc_
  • Chain 'D':
    Compound: vp4
    Species: Coxsackievirus A10 [TaxId:42769]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: SPH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >6aksA (A:)
    gdpvediihdalgstarraissatnvesaanttpsshrletgrvpalqaaetgatsnatd
    enmietrcvvnrngvlettinhffsrsglvgvvnltdggtdttgyvtwdidimgfvqlrr
    kcemftymrfnaeftfvtttkngearpymlqymyvppgapkptgrdafqwqtatnpsvfv
    kltdppaqvsvpfmspasayqwfydgyptfgqhpetsnttyglcpnnmmgtfavrvvsre
    asqlklqtrvymklkhvrawvprpirsqpyllknfpnydsskitnsardrssikqan
    

    Sequence, based on observed residues (ATOM records): (download)
    >6aksA (A:)
    dpvediiraissatnvesaanttpsshrletgrvpalqaaetgatsnatdenmietrcvv
    nrngvlettinhffsrsglvgvvnltdggtdttgyvtwdidimgfvqlrrkcemftymrf
    naeftfvtttkngearpymlqymyvppgapkptgrdafqwqtatnpsvfvkltdppaqvs
    vpfmspasayqwfydgyptfgqhpetsnttyglcpnnmmgtfavrvvsreasqlklqtrv
    ymklkhvrawvprpirsqpyllknfpnydsskitnsardrssikqan
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >6aksB (B:)
    spsveacgysdrvaqltvgnssittqeaanivlaygewpeycpdtdatavdkptrpdvsv
    nrfytldskmwqenstgwywkfpdvlnktgvfgqnaqfhylyrsgfclhvqcnaskfhqg
    allvavipefviagrgsntkpneaphpgftttfpgttgatfhdpyvldsgvplsqaliyp
    hqwinlrtnncatvivpyinavpfdsainhsnfglivipvsplkyssgattaipititia
    plnsefgglrqavsq
    

    Sequence, based on observed residues (ATOM records): (download)
    >6aksB (B:)
    sdrvaqltvgnssittqeaanivlaygewpeycpdtdatavdkptrpdvsvnrfytldsk
    mwqenstgwywkfpdvlnktgvfgqnaqfhylyrsgfclhvqcnaskfhqgallvavipe
    fviagrgsntkpneaphpgftttfpgttgatfhdpyvldsgvplsqaliyphqwinlrtn
    ncatvivpyinavpfdsainhsnfglivipvsplkyssgattaipititiaplnsefggl
    rqavsq
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >6aksC (C:)
    gipaelrpgtnqflttdddtaapilpgftptptihipgevhsllelcrvetilevnntte
    atgltrllipvssqnkadelcaafmvdpgrigpwqstlvgqicryytqwsgslkvtfmft
    gsfmatgkmlvaysppgsaqpanretamlgthviwdfglqssvslvipwisnthfrtakt
    ggnydyytagvvtlwyqtnyvvppetpgeayiiamgadlykftlkickdtdevtqqavlq
    

  • Chain 'D':
    No sequence available.