PDB entry 6a79
View 6a79 on RCSB PDB site
Description: Crystal structure of the fifth immunoglobulin domain (Ig5) of human Robo1 in complex with the mutant scFv fragment (P103A) of murine monoclonal antibody B5209B
Class: immune system
Keywords: hepatocellular carcinoma antigen, angiogenesis, immune system, antibody drug, single-chain variable fragment
Deposited on
2018-07-02, released
2019-01-30
The last revision prior to the SCOPe 2.07 freeze date was dated
2019-01-30, with a file datestamp of
2019-01-25.
Experiment type: XRAY
Resolution: 2.31 Å
R-factor: N/A
AEROSPACI score: 0.23
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: roundabout homolog 1
Species: Homo sapiens [TaxId:9606]
Gene: ROBO1, DUTT1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d6a79a1, d6a79a2 - Chain 'B':
Compound: roundabout homolog 1
Species: Homo sapiens [TaxId:9606]
Gene: ROBO1, DUTT1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d6a79b1, d6a79b2 - Chain 'H':
Compound: Heavy chain of the anti-human Robo1 antibody B5209B scFv
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d6a79h_ - Chain 'I':
Compound: Heavy chain of the anti-human Robo1 antibody B5209B scFv
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d6a79i_ - Chain 'L':
Compound: Light chain region of the anti-human Robo1 antibody B5209B scFv
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d6a79l_ - Chain 'M':
Compound: Light chain region of the anti-human Robo1 antibody B5209B scFv
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d6a79m_ - Heterogens: SO4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>6a79A (A:)
mgpvirqgpvnqtvavdgtfvlscvatgspvptilwrkdgvlvstqdsrikqlengvlqi
ryaklgdtgrytciastpsgeatwsayievq
Sequence, based on observed residues (ATOM records): (download)
>6a79A (A:)
gpvirqgpvnqtvavdgtfvlscvatgspvptilwrkdgvlvstqdsrikqlengvlqir
yaklgdtgrytciastpsgeatwsayievq
- Chain 'B':
Sequence, based on SEQRES records: (download)
>6a79B (B:)
mgpvirqgpvnqtvavdgtfvlscvatgspvptilwrkdgvlvstqdsrikqlengvlqi
ryaklgdtgrytciastpsgeatwsayievq
Sequence, based on observed residues (ATOM records): (download)
>6a79B (B:)
gpvirqgpvnqtvavdgtfvlscvatgspvptilwrkdgvlvstqdsrikqlengvlqir
yaklgdtgrytciastpsgeatwsayievq
- Chain 'H':
Sequence, based on SEQRES records: (download)
>6a79H (H:)
evqlvesgggvvqpggslklscaasgftfstydmswvrqtpdkrlelvatinsnggstyy
pdsvkgrftssrdnaknilylqmsslksedtamyycareallrpayyaldywgqgtsvtv
ssaggggsggggsggggs
Sequence, based on observed residues (ATOM records): (download)
>6a79H (H:)
evqlvesgggvvqpggslklscaasgftfstydmswvrqtpdkrlelvatinsnggstyy
pdsvkgrftssrdnaknilylqmsslksedtamyycareallrpayyaldywgqgtsvtv
ss
- Chain 'I':
Sequence, based on SEQRES records: (download)
>6a79I (I:)
evqlvesgggvvqpggslklscaasgftfstydmswvrqtpdkrlelvatinsnggstyy
pdsvkgrftssrdnaknilylqmsslksedtamyycareallrpayyaldywgqgtsvtv
ssaggggsggggsggggs
Sequence, based on observed residues (ATOM records): (download)
>6a79I (I:)
evqlvesgggvvqpggslklscaasgftfstydmswvrqtpdkrlelvatinsnggstyy
pdsvkgrftssrdnaknilylqmsslksedtamyycareallrpayyaldywgqgtsvtv
ss
- Chain 'L':
Sequence, based on SEQRES records: (download)
>6a79L (L:)
dildiqmtqspaslsasvgetvtitcgaseniygaltwyqrkqgkspqlliygainladd
kssrfsgsgsgrqyslkisslhpddvatyycqnvlstpftfgsgtkleikaa
Sequence, based on observed residues (ATOM records): (download)
>6a79L (L:)
ldiqmtqspaslsasvgetvtitcgaseniygaltwyqrkqgkspqlliygainladdks
srfsgsgsgrqyslkisslhpddvatyycqnvlstpftfgsgtkleik
- Chain 'M':
Sequence, based on SEQRES records: (download)
>6a79M (M:)
dildiqmtqspaslsasvgetvtitcgaseniygaltwyqrkqgkspqlliygainladd
kssrfsgsgsgrqyslkisslhpddvatyycqnvlstpftfgsgtkleikaa
Sequence, based on observed residues (ATOM records): (download)
>6a79M (M:)
ildiqmtqspaslsasvgetvtitcgaseniygaltwyqrkqgkspqlliygainladdk
ssrfsgsgsgrqyslkisslhpddvatyycqnvlstpftfgsgtkleik