PDB entry 5z9p

View 5z9p on RCSB PDB site
Description: Bacterial GyrB ATPase domain in complex with a chemical fragment
Class: isomerase
Keywords: DNA Topoisomerase, Antibacterial, Drug Target, Fragment-base Lead Discovery, ISOMERASE
Deposited on 2018-02-04, released 2018-12-12
The last revision prior to the SCOPe 2.07 freeze date was dated 2018-12-12, with a file datestamp of 2018-12-07.
Experiment type: XRAY
Resolution: 1.45 Å
R-factor: N/A
AEROSPACI score: 0.51 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA gyrase subunit b
    Species: Staphylococcus aureus [TaxId:1280]
    Gene: GYRB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5z9pa_
  • Chain 'B':
    Compound: DNA gyrase subunit b
    Species: Staphylococcus aureus [TaxId:1280]
    Gene: GYRB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5z9pb_
  • Heterogens: AX7, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5z9pA (A:)
    ygagqiqvlegleavrkrpgmyigstserglhhlvweivdnsidealagyanqievviek
    dnwikvtdngrgipvdiqekmgrpaveviltssvvnalsqdlevyvhrnetiyhqaykkg
    vpqfdlkevgttdktgtvirfkadgeiftettvynyetlqqrirelaflnkgiqitlrde
    rdeenvredsyhyeggi
    

    Sequence, based on observed residues (ATOM records): (download)
    >5z9pA (A:)
    qvlegleavrkrpgmyigstserglhhlvweivdnsidealagyanqievviekdnwikv
    tdngrgipvdiqekmgrpaveviltssvvnalsqdlevyvhrnetiyhqaykkgvpqfdl
    kevgttdktgtvirfkadgeiftettvynyetlqqrirelaflnkgiqitlrderdeenv
    redsyhye
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5z9pB (B:)
    ygagqiqvlegleavrkrpgmyigstserglhhlvweivdnsidealagyanqievviek
    dnwikvtdngrgipvdiqekmgrpaveviltssvvnalsqdlevyvhrnetiyhqaykkg
    vpqfdlkevgttdktgtvirfkadgeiftettvynyetlqqrirelaflnkgiqitlrde
    rdeenvredsyhyeggi
    

    Sequence, based on observed residues (ATOM records): (download)
    >5z9pB (B:)
    legleavrkrpgmyigstserglhhlvweivdnsidealagyanqievviekdnwikvtd
    ngrgipvdiqgrpaveviltssvvnalsqdlevyvhrnetiyhqaykkgvpqfdlkevgt
    tdktgtvirfkadgeiftettvynyetlqqrirelaflnkgiqitlrderdeenvredsy
    hye