PDB entry 5z9m
View 5z9m on RCSB PDB site
Description: Bacterial GyrB ATPase domain in complex with a chemical fragment
Class: isomerase
Keywords: DNA Topoisomerase, Antibacterial, Drug Target, Fragment-base Lead Discovery, ISOMERASE
Deposited on
2018-02-03, released
2018-12-12
The last revision prior to the SCOPe 2.08 freeze date was dated
2018-12-12, with a file datestamp of
2018-12-07.
Experiment type: XRAY
Resolution: 2.74 Å
R-factor: N/A
AEROSPACI score: 0.18
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: DNA gyrase subunit b
Species: Escherichia coli (strain K12) [TaxId:83333]
Gene: gyrB, acrB, cou, himB, hisU, nalC, parA, pcbA, b3699, JW5625
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5z9ma_ - Chain 'B':
Compound: DNA gyrase subunit b
Species: Escherichia coli (strain K12) [TaxId:83333]
Gene: gyrB, acrB, cou, himB, hisU, nalC, parA, pcbA, b3699, JW5625
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5z9mb_ - Heterogens: BZ2, SO4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5z9mA (A:)
gldavrkrpgmyigdtddgtglhhmvfevvdnaidealaghckeiivtihadnsvsvqdd
grgiptgihpeegvsaaevimtvlhaggkfddnsykvsgglhgvgvsvvnalsqklelvi
qregkihrqiyehgvpqaplavtgetektgtmvrfwpsletftnvtefeyeilakrlrel
sflnsgvsirlrdkrdgkedhfhyegg
Sequence, based on observed residues (ATOM records): (download)
>5z9mA (A:)
ldavrkrpgmyigdtddgtglhhmvfevvdnaidealaghckeiivtihadnsvsvqddg
rgiptgihpeegvsaaevimtvlgvgvsvvnalsqklelviqregkihrqiyehgvpqap
lavtgetektgtmvrfwpsletftnvtefeyeilakrlrelsflnsgvsirlrdkrdgke
dhfhyeg
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5z9mB (B:)
gldavrkrpgmyigdtddgtglhhmvfevvdnaidealaghckeiivtihadnsvsvqdd
grgiptgihpeegvsaaevimtvlhaggkfddnsykvsgglhgvgvsvvnalsqklelvi
qregkihrqiyehgvpqaplavtgetektgtmvrfwpsletftnvtefeyeilakrlrel
sflnsgvsirlrdkrdgkedhfhyegg
Sequence, based on observed residues (ATOM records): (download)
>5z9mB (B:)
ldavrkrpgmyigdtddgtglhhmvfevvdnaidealaghckeiivtihadnsvsvqddg
rgiptgihpeegvsaaevimtvlhgvgvsvvnalsqklelviqregkihrqiyehgvpqa
plavtgetektgtmvrfwpsletftnvtefeyeilakrlrelsflnsgvsirlrdkrdgk
edhfhyeg