PDB entry 5z5c

View 5z5c on RCSB PDB site
Description: Crystal structure of hydrogen sulfide-producing enzyme (Fn1055) from Fusobacterium nucleatum: lysine-dimethylated form
Class: transferase
Keywords: Pyridoxal 5'-phosphate dependent enzyme, Internal aldimine, TRANSFERASE
Deposited on 2018-01-17, released 2018-02-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-03-07, with a file datestamp of 2018-03-02.
Experiment type: XRAY
Resolution: 2.07 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Cysteine synthase
    Species: Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) [TaxId:190304]
    Gene: FN1055
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5z5ca_
  • Chain 'B':
    Compound: Cysteine synthase
    Species: Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) [TaxId:190304]
    Gene: FN1055
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8REP3 (5-End)
      • expression tag (3-4)
    Domains in SCOPe 2.08: d5z5cb1, d5z5cb2
  • Chain 'C':
    Compound: Cysteine synthase
    Species: Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) [TaxId:190304]
    Gene: FN1055
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5z5cc_
  • Chain 'D':
    Compound: Cysteine synthase
    Species: Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) [TaxId:190304]
    Gene: FN1055
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5z5cd_
  • Heterogens: PLP, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5z5cA (A:)
    gplgseqkkmkylenlvgktpmlelifdykgeerrifvknesynltgsikdrmafytlkk
    ayekneikkgapiveatsgntgiafsamgailghpviiympdwmseerkslirsfgakii
    lvsrkeggflgsiektkefaknnpdtylpsqfsnlynseahyygigleivnemkslnlni
    dgfvagvgtggtvmgigkrikenfsnakicpleplnsptlstgykvakhriegisdefip
    dlvkldkldnvvsvddgdaivmaqklakcglgvgissganfigalmlqnklgkdsvivtv
    fpddnkkylstdlmreekvkedflskditlkeiknvlrvi
    

    Sequence, based on observed residues (ATOM records): (download)
    >5z5cA (A:)
    kmkylenlvgktpmlelifdykgeerrifvknesynltgsikdrmafytlkkayekneik
    kgapiveatsgntgiafsamgailghpviiympdwmseerkslirsfgakiilvsrkegg
    flgsiektkefaknnpdtylpsqfsnlynseahyygigleivnemkslnlnidgfvagvg
    tggtvmgigkrikenfsnakicpleplnsptlstgykvakhriegisdefipdlvkldkl
    dnvvsvddgdaivmaqklakcglgvgissganfigalmlqnklgkdsvivtvfpddnkky
    lstdlmreekvkedflskditlkeiknvlrv
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5z5cB (B:)
    gplgseqkkmkylenlvgktpmlelifdykgeerrifvknesynltgsikdrmafytlkk
    ayekneikkgapiveatsgntgiafsamgailghpviiympdwmseerkslirsfgakii
    lvsrkeggflgsiektkefaknnpdtylpsqfsnlynseahyygigleivnemkslnlni
    dgfvagvgtggtvmgigkrikenfsnakicpleplnsptlstgykvakhriegisdefip
    dlvkldkldnvvsvddgdaivmaqklakcglgvgissganfigalmlqnklgkdsvivtv
    fpddnkkylstdlmreekvkedflskditlkeiknvlrvi
    

    Sequence, based on observed residues (ATOM records): (download)
    >5z5cB (B:)
    gseqkkmkylenlvgktpmlelifdykgeerrifvknesynltgsikdrmafytlkkaye
    kneikkgapiveatsgntgiafsamgailghpviiympdwmseerkslirsfgakiilvs
    rkeggflgsiektkefaknnpdtylpsqfsnlynseahyygigleivnemkslnlnidgf
    vagvgtggtvmgigkrikenfsnakicpleplnsptlstgykvakhriegisdefipdlv
    kldkldnvvsvddgdaivmaqklakcglgvgissganfigalmlqnklgkdsvivtvfpd
    dnkkylstdlmreekvkedflskditlkeiknvlrv
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >5z5cC (C:)
    gplgseqkkmkylenlvgktpmlelifdykgeerrifvknesynltgsikdrmafytlkk
    ayekneikkgapiveatsgntgiafsamgailghpviiympdwmseerkslirsfgakii
    lvsrkeggflgsiektkefaknnpdtylpsqfsnlynseahyygigleivnemkslnlni
    dgfvagvgtggtvmgigkrikenfsnakicpleplnsptlstgykvakhriegisdefip
    dlvkldkldnvvsvddgdaivmaqklakcglgvgissganfigalmlqnklgkdsvivtv
    fpddnkkylstdlmreekvkedflskditlkeiknvlrvi
    

    Sequence, based on observed residues (ATOM records): (download)
    >5z5cC (C:)
    kkmkylenlvgktpmlelifdykgeerrifvknesynltgsikdrmafytlkkayeknei
    kkgapiveatsgntgiafsamgailghpviiympdwmseerkslirsfgakiilvsrkeg
    gflgsiektkefaknnpdtylpsqfsnlynseahyygigleivnemkslnlnidgfvagv
    gtggtvmgigkrikenfsnakicpleplnsptlstgykvakhriegisdefipdlvkldk
    ldnvvsvddgdaivmaqklakcglgvgissganfigalmlqnklgkdsvivtvfpddnkk
    ylstdlmreekvkedflskditlkeiknvlrv
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >5z5cD (D:)
    gplgseqkkmkylenlvgktpmlelifdykgeerrifvknesynltgsikdrmafytlkk
    ayekneikkgapiveatsgntgiafsamgailghpviiympdwmseerkslirsfgakii
    lvsrkeggflgsiektkefaknnpdtylpsqfsnlynseahyygigleivnemkslnlni
    dgfvagvgtggtvmgigkrikenfsnakicpleplnsptlstgykvakhriegisdefip
    dlvkldkldnvvsvddgdaivmaqklakcglgvgissganfigalmlqnklgkdsvivtv
    fpddnkkylstdlmreekvkedflskditlkeiknvlrvi
    

    Sequence, based on observed residues (ATOM records): (download)
    >5z5cD (D:)
    kkmkylenlvgktpmlelifdykgeerrifvknesynltgsikdrmafytlkkayeknei
    kkgapiveatsgntgiafsamgailghpviiympdwmseerkslirsfgakiilvsrkeg
    gflgsiektkefaknnpdtylpsqfsnlynseahyygigleivnemkslnlnidgfvagv
    gtggtvmgigkrikenfsnakicpleplnsptlstgykvakhriegisdefipdlvkldk
    ldnvvsvddgdaivmaqklakcglgvgissganfigalmlqnklgkdsvivtvfpddnkk
    ylstdlmreekvkedflskditlkeiknvlrv