PDB entry 5z47

View 5z47 on RCSB PDB site
Description: Crystal structure of pyrrolidone carboxylate peptidase I with disordered loop A from Deinococcus radiodurans R1
Class: hydrolase
Keywords: omega peptidase, pyroglutamate, exopeptidase, HYDROLASE
Deposited on 2018-01-10, released 2019-01-16
The last revision prior to the SCOPe 2.07 freeze date was dated 2019-01-16, with a file datestamp of 2019-01-11.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pyrrolidone-carboxylate peptidase
    Species: Deinococcus radiodurans R1 [TaxId:243230]
    Gene: pcp, DR_0490
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RX25 (2-End)
      • expression tag (0-1)
    Domains in SCOPe 2.07: d5z47a1, d5z47a2
  • Chain 'B':
    Compound: Pyrrolidone-carboxylate peptidase
    Species: Deinococcus radiodurans R1 [TaxId:243230]
    Gene: pcp, DR_0490
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RX25 (2-End)
      • expression tag (1)
    Domains in SCOPe 2.07: d5z47b1, d5z47b2
  • Heterogens: DMS, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5z47A (A:)
    gsmptllltgfepfhthpdnpsaqaaqelhglelpggwgvhsallpvephaagaaltrll
    seqdpgavlltglaagrpqvtlervgvgvmdfqipdnagqtyrdqpiepdapaaylatlp
    lrailaawreaeipgdisnsaglyvcnfvlyhalhwlrehgrgavpcgflhvpanaaval
    avpadrpplpylpqseitravrvaaeaitaqssvlqmgkm
    

    Sequence, based on observed residues (ATOM records): (download)
    >5z47A (A:)
    gsmptllltgfeppdnpsaqaaqelhglelpggwgvhsallpvephaagaaltrllseqd
    pgavlltglaagrpqvtlervgvgvmdfqipdnagqtyrdqpiepdapaaylatlplrai
    laawreaeipgdisnsaglyvcnfvlyhalhwlrehgrgavpcgflhvpanaavalavpa
    drpplpylpqseitravrvaaeaitaqs
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5z47B (B:)
    gsmptllltgfepfhthpdnpsaqaaqelhglelpggwgvhsallpvephaagaaltrll
    seqdpgavlltglaagrpqvtlervgvgvmdfqipdnagqtyrdqpiepdapaaylatlp
    lrailaawreaeipgdisnsaglyvcnfvlyhalhwlrehgrgavpcgflhvpanaaval
    avpadrpplpylpqseitravrvaaeaitaqssvlqmgkm
    

    Sequence, based on observed residues (ATOM records): (download)
    >5z47B (B:)
    smptllltgfeppdnpsaqaaqelhglelpggwgvhsallpvephaagaaltrllseqdp
    gavlltglaagrpqvtlervgvgvmdfqipdnagqtyrdqpiepdapaaylatlplrail
    aawreaeipgdisnsaglyvcnfvlyhalhwlrehgrgavpcgflhvpanaavalavpad
    rpplpylpqseitravrvaaeaitaqs