PDB entry 5z40
View 5z40 on RCSB PDB site
Description: Crystal structure of pyrrolidone carboxylate peptidase I from Deionococcus radiodurans R1
Class: hydrolase
Keywords: omega peptidase, pyroglutamate, exopeptidase, HYDROLASE
Deposited on
2018-01-09, released
2019-01-16
The last revision prior to the SCOPe 2.08 freeze date was dated
2019-01-16, with a file datestamp of
2019-01-11.
Experiment type: XRAY
Resolution: 1.84 Å
R-factor: N/A
AEROSPACI score: 0.35
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Pyrrolidone-carboxylate peptidase
Species: Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) [TaxId:243230]
Gene: pcp, DR_0490
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5z40a_ - Chain 'B':
Compound: Pyrrolidone-carboxylate peptidase
Species: Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) [TaxId:243230]
Gene: pcp, DR_0490
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5z40b_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5z40A (A:)
mptllltgfepfhthpdnpsaqaaqelhglelpggwgvhsallpvephaagaaltrllse
qdpgavlltglaagrpqvtlervgvgvmdfqipdnagqtyrdqpiepdapaaylatlplr
ailaawreaeipgdisnsaglyvcnfvlyhalhwlrehgrgavpcgflhvpanaavalav
padrpplpylpqseitravrvaaeaitaqssvlqmgkm
Sequence, based on observed residues (ATOM records): (download)
>5z40A (A:)
mptllltgfepfhthpdnpsaqaaqelhglelpggwgvhsallpvephaagaaltrllse
qdpgavlltglaagrpqvtlervgvgvmdfqipdnagqtyrdqpiepdapaaylatlplr
ailaawreaeipgdisnsaglyvcnfvlyhalhwlrehgrgavpcgflhvpanaavalav
padrpplpylpqseitravrvaaeaitaqs
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5z40B (B:)
mptllltgfepfhthpdnpsaqaaqelhglelpggwgvhsallpvephaagaaltrllse
qdpgavlltglaagrpqvtlervgvgvmdfqipdnagqtyrdqpiepdapaaylatlplr
ailaawreaeipgdisnsaglyvcnfvlyhalhwlrehgrgavpcgflhvpanaavalav
padrpplpylpqseitravrvaaeaitaqssvlqmgkm
Sequence, based on observed residues (ATOM records): (download)
>5z40B (B:)
mptllltgfepfhthpdnpsaqaaqelhglelpggwgvhsallpvephaagaaltrllse
qdpgavlltglaagrpqvtlervgvgvmdfqipdnagqtyrdqpiepdapaaylatlplr
ailaawreaeipgdisnsaglyvcnfvlyhalhwlrehgrgavpcgflhvpanaavalav
padrpplpylpqseitravrvaaeaitaqs