PDB entry 5z2m
View 5z2m on RCSB PDB site
Description: Structure of Orp1L/Rab7 complex
Class: endocytosis
Keywords: GTPase, Effector, Complex, ENDOCYTOSIS
Deposited on
2018-01-03, released
2018-08-08
The last revision prior to the SCOPe 2.08 freeze date was dated
2018-09-19, with a file datestamp of
2018-09-14.
Experiment type: XRAY
Resolution: 2.14 Å
R-factor: N/A
AEROSPACI score: 0.29
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Ras-related protein Rab-7a
Species: Mus musculus [TaxId:10090]
Gene: RAB7A, RAB7
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5z2ma_ - Chain 'B':
Compound: Oxysterol-binding protein-related protein 1
Species: Mus musculus [TaxId:10090]
Gene: Osbpl1a, Orp1, Orp1a, Orp1l
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5z2mb1, d5z2mb2 - Chain 'C':
Compound: Ras-related protein Rab-7a
Species: Mus musculus [TaxId:10090]
Gene: RAB7A, RAB7
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5z2mc_ - Chain 'D':
Compound: Oxysterol-binding protein-related protein 1
Species: Mus musculus [TaxId:10090]
Gene: Osbpl1a, Orp1, Orp1a, Orp1l
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5z2md1, d5z2md2 - Heterogens: MG, GTP, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5z2mA (A:)
mtsrkkvllkviilgdsgvgktslmnqyvnkkfsnqykatigadfltkevmvddrlvtmq
iwdtaglerfqslgvafyrgadccvlvfdvtapntfktldswrdefliqasprdpenfpf
vvlgnkidlenrqvatkraqawcysknnipyfetsakeainveqafqtiarnalkq
Sequence, based on observed residues (ATOM records): (download)
>5z2mA (A:)
kkvllkviilgdsgvgktslmnqyvnkkfsnqykatigadfltkevmvddrlvtmqiwdt
aglerfqslgvafyrgadccvlvfdvtapntfktldswrdefliqasprdpenfpfvvlg
nkidlenrqvatkraqawcysknnipyfetsakeainveqafqtiarnalkq
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5z2mB (B:)
gsmnteaeqqllhharngnaeevrkllaamarmevvadidckgrsksnlgwtplhlacyf
ghkqvvedllkagakvnmlndmgdtplhraaftgrkelvlllleydadstvvngsgqtak
eathdkeirnmleavert
Sequence, based on observed residues (ATOM records): (download)
>5z2mB (B:)
smnteaeqqllhharngnaeevrkllaamarmevvadidckgrsksnlgwtplhlacyfg
hkqvvedllkagakvnmlndmgdtplhraaftgrkelvlllleydadstvvngsgqtake
athdkeirnmleavert
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5z2mC (C:)
mtsrkkvllkviilgdsgvgktslmnqyvnkkfsnqykatigadfltkevmvddrlvtmq
iwdtaglerfqslgvafyrgadccvlvfdvtapntfktldswrdefliqasprdpenfpf
vvlgnkidlenrqvatkraqawcysknnipyfetsakeainveqafqtiarnalkq
Sequence, based on observed residues (ATOM records): (download)
>5z2mC (C:)
kkvllkviilgdsgvgktslmnqyvnkkfsnqykaadfltkevmvddrlvtmqiwdtagl
erfqslgvafyrgadccvlvfdvtapntfktldswrdefliqasprdpenfpfvvlgnki
dlenrqvatkraqawcysknnipyfetsakeainveqafqtiarnalk
- Chain 'D':
Sequence, based on SEQRES records: (download)
>5z2mD (D:)
gsmnteaeqqllhharngnaeevrkllaamarmevvadidckgrsksnlgwtplhlacyf
ghkqvvedllkagakvnmlndmgdtplhraaftgrkelvlllleydadstvvngsgqtak
eathdkeirnmleavert
Sequence, based on observed residues (ATOM records): (download)
>5z2mD (D:)
gsmnteaeqqllhharngnaeevrkllaamarmevvadidckgrsksnlgwtplhlacyf
ghkqvvedllkagakvnmlndmgdtplhraaftgrkelvlllleydadstvvngsgqtak
eathdkeirnmleave