PDB entry 5yxn
View 5yxn on RCSB PDB site
Description: A T cell receptor in complex with HLA-A0201 restricted Hepatitis C virus NS3 peptide (KLVALGINAV)
Class: immune system
Keywords: TCR-peptide-HLA complex, IMMUNE SYSTEM
Deposited on
2017-12-06, released
2018-12-12
The last revision prior to the SCOPe 2.08 freeze date was dated
2018-12-12, with a file datestamp of
2018-12-07.
Experiment type: XRAY
Resolution: 2.03 Å
R-factor: N/A
AEROSPACI score: 0.3
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: T cell receptor alpha chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5yxna1, d5yxna2 - Chain 'B':
Compound: T cell receptor beta chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5yxnb1, d5yxnb2 - Chain 'C':
Compound: HLA class I histocompatibility antigen, A-2 alpha chain
Species: Homo sapiens [TaxId:9606]
Gene: HLA-A, HLAA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5yxnc1, d5yxnc2 - Chain 'D':
Compound: Beta-2-microglobulin
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5yxnd_ - Chain 'I':
Compound: NS3 peptide
Species: Hepatitis C virus [TaxId:11103]
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>5yxnA (A:)
aqtvtqsqpemsvqeaetvtlsctydtsesdyylfwykqppsrqmilvirqeaykqqnat
enrfsvnfqkaaksfslkisdsqlgdaamyfcaygeddkiifgkgtrlhilpniqnpdpa
vyqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsnk
sdfacanafnns
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>5yxnB (B:)
aadiyqtprylvigtgkkitlecsqtmghdkmywyqqdpgmelhlihysygvnstekgdl
ssestvsrirtehfpltlesarpshtsqylcasrrgpyeqyfgpgtrltvtedlknvfpp
evavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplkeqpal
ndsryalssrlrvsatfwqdprnhfrcqvqfyglsendewtqdrakpvtqivsaeawgra
d
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>5yxnC (C:)
gshsmryfftsvsrpgrgeprfiavgyvddtqfvrfdsdaasqrmeprapwieqegpeyw
dgetrkvkahsqthrvdlgtlrgyynqseagshtvqrmygcdvgsdwrflrgyhqyaydg
kdyialkedlrswtaadmaaqttkhkweaahvaeqlraylegtcvewlrrylengketlq
rtdapkthmthhavsdheatlrcwalsfypaeitltwqrdgedqtqdtelvetrpagdgt
fqkwaavvvpsgqeqrytchvqheglpkpltlrwe
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>5yxnD (D:)
giqrtpkiqvysrhpaengksnflncyvsgfhpseievdllkngeriekvehsdlsfsed
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
- Chain 'I':
No sequence available.