PDB entry 5yu2
View 5yu2 on RCSB PDB site
Description: Structure of Ribonuclease YabJ
Class: gene regulation
Keywords: SAV0497, YabJ, ribonuclease, GENE REGULATION
Deposited on
2017-11-20, released
2018-09-26
The last revision prior to the SCOPe 2.07 freeze date was dated
2018-09-26, with a file datestamp of
2018-09-21.
Experiment type: XRAY
Resolution: 1.75 Å
R-factor: N/A
AEROSPACI score: 0.38
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Translation initiation inhibitor homologue
Species: Staphylococcus aureus (strain Mu50 / ATCC 700699) [TaxId:158878]
Gene: SAV0497
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5yu2a1, d5yu2a2 - Chain 'B':
Compound: Translation initiation inhibitor homologue
Species: Staphylococcus aureus (strain Mu50 / ATCC 700699) [TaxId:158878]
Gene: SAV0497
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5yu2b_ - Chain 'C':
Compound: Translation initiation inhibitor homologue
Species: Staphylococcus aureus (strain Mu50 / ATCC 700699) [TaxId:158878]
Gene: SAV0497
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5yu2c_ - Chain 'D':
Compound: Translation initiation inhibitor homologue
Species: Staphylococcus aureus (strain Mu50 / ATCC 700699) [TaxId:158878]
Gene: SAV0497
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5yu2d_ - Chain 'E':
Compound: Translation initiation inhibitor homologue
Species: Staphylococcus aureus (strain Mu50 / ATCC 700699) [TaxId:158878]
Gene: SAV0497
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5yu2e_ - Chain 'F':
Compound: Translation initiation inhibitor homologue
Species: Staphylococcus aureus (strain Mu50 / ATCC 700699) [TaxId:158878]
Gene: SAV0497
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5yu2f_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5yu2A (A:)
gaasmkiinttrlpealgpyshatvvngmvytsgqiplnvdgkivsadvqaqtkqvlenl
kvvleeagsdlnsvakatifikdmndfqkinevygqyfnehkparscvevarlpkdvkve
ielvskikel
Sequence, based on observed residues (ATOM records): (download)
>5yu2A (A:)
gaasmkiinttrlpealgpyshatvvngmvytsgqiplnvdgkivsadvqaqtkqvlenl
kvvleeagsdlnsvakatifikdmndfqkinevygqyfnehkparscvevarlpkdvkve
ielvskik
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5yu2B (B:)
gaasmkiinttrlpealgpyshatvvngmvytsgqiplnvdgkivsadvqaqtkqvlenl
kvvleeagsdlnsvakatifikdmndfqkinevygqyfnehkparscvevarlpkdvkve
ielvskikel
Sequence, based on observed residues (ATOM records): (download)
>5yu2B (B:)
mkiinttrlpealgpyshatvvngmvytsgqiplnvdgkivsadvqaqtkqvlenlkvvl
eeagsdlnsvakatifikdmndfqkinevygqyfnehkparscvevarlpkdvkveielv
skik
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5yu2C (C:)
gaasmkiinttrlpealgpyshatvvngmvytsgqiplnvdgkivsadvqaqtkqvlenl
kvvleeagsdlnsvakatifikdmndfqkinevygqyfnehkparscvevarlpkdvkve
ielvskikel
Sequence, based on observed residues (ATOM records): (download)
>5yu2C (C:)
mkiinttrlpealgpyshatvvngmvytsgqiplnvdgkivsadvqaqtkqvlenlkvvl
eeagsdlnsvakatifikdmndfqkinevygqyfnehkparscvevarlpkdvkveielv
skikel
- Chain 'D':
Sequence, based on SEQRES records: (download)
>5yu2D (D:)
gaasmkiinttrlpealgpyshatvvngmvytsgqiplnvdgkivsadvqaqtkqvlenl
kvvleeagsdlnsvakatifikdmndfqkinevygqyfnehkparscvevarlpkdvkve
ielvskikel
Sequence, based on observed residues (ATOM records): (download)
>5yu2D (D:)
mkiinttrlpealgpyshatvvngmvytsgqiplnvdgkivsadvqaqtkqvlenlkvvl
eeagsdlnsvakatifikdmndfqkinevygqyfnehkparscvevarlpkdvkveielv
skik
- Chain 'E':
Sequence, based on SEQRES records: (download)
>5yu2E (E:)
gaasmkiinttrlpealgpyshatvvngmvytsgqiplnvdgkivsadvqaqtkqvlenl
kvvleeagsdlnsvakatifikdmndfqkinevygqyfnehkparscvevarlpkdvkve
ielvskikel
Sequence, based on observed residues (ATOM records): (download)
>5yu2E (E:)
mkiinttrlpealgpyshatvvngmvytsgqiplnvdgkivsadvqaqtkqvlenlkvvl
eeagsdlnsvakatifikdmndfqkinevygqyfnehkparscvevarlpkdvkveielv
skik
- Chain 'F':
Sequence, based on SEQRES records: (download)
>5yu2F (F:)
gaasmkiinttrlpealgpyshatvvngmvytsgqiplnvdgkivsadvqaqtkqvlenl
kvvleeagsdlnsvakatifikdmndfqkinevygqyfnehkparscvevarlpkdvkve
ielvskikel
Sequence, based on observed residues (ATOM records): (download)
>5yu2F (F:)
mkiinttrlpealgpyshatvvngmvytsgqiplnvdgkivsadvqaqtkqvlenlkvvl
eeagsdlnsvakatifikdmndfqkinevygqyfnehkparscvevarlpkdvkveielv
skik