PDB entry 5yto

View 5yto on RCSB PDB site
Description: Crystal Structure of human Superoxide Dismutase I (hSOD1) in complex with a napthalene-catechol linked compound.
Class: oxidoreductase
Keywords: dismutase, ligand complex, dimer, OXIDOREDUCTASE
Deposited on 2017-11-19, released 2018-11-21
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-11-21, with a file datestamp of 2018-11-16.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Superoxide dismutase [Cu-Zn]
    Species: Homo sapiens [TaxId:9606]
    Gene: SOD1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P00441 (26-179)
      • expression tag (25)
    Domains in SCOPe 2.08: d5ytoa1, d5ytoa2
  • Chain 'B':
    Compound: Superoxide dismutase [Cu-Zn]
    Species: Homo sapiens [TaxId:9606]
    Gene: SOD1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ytob_
  • Chain 'C':
    Compound: Superoxide dismutase [Cu-Zn]
    Species: Homo sapiens [TaxId:9606]
    Gene: SOD1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ytoc_
  • Chain 'D':
    Compound: Superoxide dismutase [Cu-Zn]
    Species: Homo sapiens [TaxId:9606]
    Gene: SOD1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P00441 (26-179)
      • expression tag (25)
    Domains in SCOPe 2.08: d5ytod1, d5ytod2
  • Chain 'E':
    Compound: Superoxide dismutase [Cu-Zn]
    Species: Homo sapiens [TaxId:9606]
    Gene: SOD1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ytoe_
  • Chain 'F':
    Compound: Superoxide dismutase [Cu-Zn]
    Species: Homo sapiens [TaxId:9606]
    Gene: SOD1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P00441 (26-179)
      • expression tag (25)
    Domains in SCOPe 2.08: d5ytof1, d5ytof2
  • Chain 'G':
    Compound: Superoxide dismutase [Cu-Zn]
    Species: Homo sapiens [TaxId:9606]
    Gene: SOD1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ytog_
  • Chain 'H':
    Compound: Superoxide dismutase [Cu-Zn]
    Species: Homo sapiens [TaxId:9606]
    Gene: SOD1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ytoh_
  • Chain 'I':
    Compound: Superoxide dismutase [Cu-Zn]
    Species: Homo sapiens [TaxId:9606]
    Gene: SOD1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ytoi_
  • Chain 'J':
    Compound: Superoxide dismutase [Cu-Zn]
    Species: Homo sapiens [TaxId:9606]
    Gene: SOD1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ytoj_
  • Heterogens: 946, ZN, GOL, PS5, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5ytoA (A:)
mkhhhhhhpmsdydipttenlyfqgamatkavcvlkgdgpvqgiinfeqkesngpvkvwg
sikglteglhgfhvhefgdntagctsagphfnplsrkhggpkdeerhvgdlgnvtadkdg
vadvsiedsvislsgdhciigrtlvvhekaddlgkggneestktgnagsrlacgvigiaq

    Sequence, based on observed residues (ATOM records): (download) 
    >5ytoA (A:)
amatkavcvlkgdgpvqgiinfeqkesngpvkvwgsikglteglhgfhvhefgdntagct
sagphfnplsrkhggpkdeerhvgdlgnvtadkdgvadvsiedsvislsgdhciigrtlv
vhekaddlgkggneestktgnagsrlacgvigiaq

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5ytoB (B:)
mkhhhhhhpmsdydipttenlyfqgamatkavcvlkgdgpvqgiinfeqkesngpvkvwg
sikglteglhgfhvhefgdntagctsagphfnplsrkhggpkdeerhvgdlgnvtadkdg
vadvsiedsvislsgdhciigrtlvvhekaddlgkggneestktgnagsrlacgvigiaq

    Sequence, based on observed residues (ATOM records): (download) 
    >5ytoB (B:)
matkavcvlkgdgpvqgiinfeqkesngpvkvwgsikglteglhgfhvhefgdntagcts
agphfnplsrkhggpkdeerhvgdlgnvtadkdgvadvsiedsvislsgdhciigrtlvv
hekaddlgkggneestktgnagsrlacgvigiaq

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5ytoC (C:)
mkhhhhhhpmsdydipttenlyfqgamatkavcvlkgdgpvqgiinfeqkesngpvkvwg
sikglteglhgfhvhefgdntagctsagphfnplsrkhggpkdeerhvgdlgnvtadkdg
vadvsiedsvislsgdhciigrtlvvhekaddlgkggneestktgnagsrlacgvigiaq

    Sequence, based on observed residues (ATOM records): (download) 
    >5ytoC (C:)
matkavcvlkgdgpvqgiinfeqkesngpvkvwgsikglteglhgfhvhefgdntagcts
agphfnplsrkhggpkdeerhvgdlgnvtadkdgvadvsiedsvislsgdhciigrtlvv
hekaddlgkggneestktgnagsrlacgvigiaq

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5ytoD (D:)
mkhhhhhhpmsdydipttenlyfqgamatkavcvlkgdgpvqgiinfeqkesngpvkvwg
sikglteglhgfhvhefgdntagctsagphfnplsrkhggpkdeerhvgdlgnvtadkdg
vadvsiedsvislsgdhciigrtlvvhekaddlgkggneestktgnagsrlacgvigiaq

    Sequence, based on observed residues (ATOM records): (download) 
    >5ytoD (D:)
amatkavcvlkgdgpvqgiinfeqkesngpvkvwgsikglteglhgfhvhefgdntagct
sagphfnplsrkhggpkdeerhvgdlgnvtadkdgvadvsiedsvislsgdhciigrtlv
vhekaddlgkggneestktgnagsrlacgvigiaq

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5ytoE (E:)
mkhhhhhhpmsdydipttenlyfqgamatkavcvlkgdgpvqgiinfeqkesngpvkvwg
sikglteglhgfhvhefgdntagctsagphfnplsrkhggpkdeerhvgdlgnvtadkdg
vadvsiedsvislsgdhciigrtlvvhekaddlgkggneestktgnagsrlacgvigiaq

    Sequence, based on observed residues (ATOM records): (download) 
    >5ytoE (E:)
matkavcvlkgdgpvqgiinfeqkesngpvkvwgsikglteglhgfhvhefgdntagcts
agphfnplsrkhggpkdeerhvgdlgnvtadkdgvadvsiedsvislsgdhciigrtlvv
hekaddlgkggneestktgnagsrlacgvigiaq

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5ytoF (F:)
mkhhhhhhpmsdydipttenlyfqgamatkavcvlkgdgpvqgiinfeqkesngpvkvwg
sikglteglhgfhvhefgdntagctsagphfnplsrkhggpkdeerhvgdlgnvtadkdg
vadvsiedsvislsgdhciigrtlvvhekaddlgkggneestktgnagsrlacgvigiaq

    Sequence, based on observed residues (ATOM records): (download) 
    >5ytoF (F:)
amatkavcvlkgdgpvqgiinfeqkesngpvkvwgsikglteglhgfhvhefgdntagct
sagphfnplsrkhggpkdeerhvgdlgnvtadkdgvadvsiedsvislsgdhciigrtlv
vhekaddlgkggneestktgnagsrlacgvigiaq

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >5ytoG (G:)
mkhhhhhhpmsdydipttenlyfqgamatkavcvlkgdgpvqgiinfeqkesngpvkvwg
sikglteglhgfhvhefgdntagctsagphfnplsrkhggpkdeerhvgdlgnvtadkdg
vadvsiedsvislsgdhciigrtlvvhekaddlgkggneestktgnagsrlacgvigiaq

    Sequence, based on observed residues (ATOM records): (download) 
    >5ytoG (G:)
atkavcvlkgdgpvqgiinfeqkesngpvkvwgsikglteglhgfhvhefgdntagctsa
gphfnplsrkhggpkdeerhvgdlgnvtadkdgvadvsiedsvislsgdhciigrtlvvh
ekaddlgkggneestktgnagsrlacgvigiaq

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >5ytoH (H:)
mkhhhhhhpmsdydipttenlyfqgamatkavcvlkgdgpvqgiinfeqkesngpvkvwg
sikglteglhgfhvhefgdntagctsagphfnplsrkhggpkdeerhvgdlgnvtadkdg
vadvsiedsvislsgdhciigrtlvvhekaddlgkggneestktgnagsrlacgvigiaq

    Sequence, based on observed residues (ATOM records): (download) 
    >5ytoH (H:)
matkavcvlkgdgpvqgiinfeqkesngpvkvwgsikglteglhgfhvhefgdntagcts
agphfnplsrkhggpkdeerhvgdlgnvtadkdgvadvsiedsvislsgdhciigrtlvv
hekaddlgkggneestktgnagsrlacgvigiaq

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >5ytoI (I:)
mkhhhhhhpmsdydipttenlyfqgamatkavcvlkgdgpvqgiinfeqkesngpvkvwg
sikglteglhgfhvhefgdntagctsagphfnplsrkhggpkdeerhvgdlgnvtadkdg
vadvsiedsvislsgdhciigrtlvvhekaddlgkggneestktgnagsrlacgvigiaq

    Sequence, based on observed residues (ATOM records): (download) 
    >5ytoI (I:)
atkavcvlkgdgpvqgiinfeqkesngpvkvwgsikglteglhgfhvhefgdntagctsa
gphfnplsrkhggpkdeerhvgdlgnvtadkdgvadvsiedsvislsgdhciigrtlvvh
ekaddlgkggneestktgnagsrlacgvigiaq

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >5ytoJ (J:)
mkhhhhhhpmsdydipttenlyfqgamatkavcvlkgdgpvqgiinfeqkesngpvkvwg
sikglteglhgfhvhefgdntagctsagphfnplsrkhggpkdeerhvgdlgnvtadkdg
vadvsiedsvislsgdhciigrtlvvhekaddlgkggneestktgnagsrlacgvigiaq

    Sequence, based on observed residues (ATOM records): (download) 
    >5ytoJ (J:)
atkavcvlkgdgpvqgiinfeqkesngpvkvwgsikglteglhgfhvhefgdntagctsa
gphfnprhvgdlgnvtadkdgvadvsiedsvislsgdhciigrtlvvhekaddsrlacgv
igiaq