PDB entry 5yt6

View 5yt6 on RCSB PDB site
Description: Crystal structure of TAX1BP1 UBZ2 in complex with mono-ubiquitin
Class: protein binding
Keywords: TAX1BP1, ubiquitin, complex, autophagy receptor, PROTEIN BINDING
Deposited on 2017-11-17, released 2018-07-11
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-09-05, with a file datestamp of 2018-08-31.
Experiment type: XRAY
Resolution: 1.5 Å
R-factor: N/A
AEROSPACI score: 0.5 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBB
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG47 (2-End)
      • expression tag (0-1)
    Domains in SCOPe 2.08: d5yt6a1, d5yt6a2
  • Chain 'B':
    Compound: tax1-binding protein 1
    Species: Homo sapiens [TaxId:9606]
    Gene: TAX1BP1, T6BP, PRO0105
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q86VP1 (1-34)
      • expression tag (0)
  • Chain 'C':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBB
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG47 (2-End)
      • expression tag (1)
    Domains in SCOPe 2.08: d5yt6c1, d5yt6c2
  • Chain 'D':
    Compound: tax1-binding protein 1
    Species: Homo sapiens [TaxId:9606]
    Gene: TAX1BP1, T6BP, PRO0105
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBB
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG47 (2-End)
      • expression tag (1)
    Domains in SCOPe 2.08: d5yt6e1, d5yt6e2
  • Chain 'F':
    Compound: tax1-binding protein 1
    Species: Homo sapiens [TaxId:9606]
    Gene: TAX1BP1, T6BP, PRO0105
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q86VP1 (1-34)
      • expression tag (0)
  • Chain 'G':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBB
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG47 (2-End)
      • expression tag (1)
    Domains in SCOPe 2.08: d5yt6g1, d5yt6g2
  • Chain 'H':
    Compound: tax1-binding protein 1
    Species: Homo sapiens [TaxId:9606]
    Gene: TAX1BP1, T6BP, PRO0105
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q86VP1 (1-End)
      • expression tag (0)
  • Heterogens: ZN, SO4, GOL, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5yt6A (A:)
gsmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >5yt6A (A:)
gsmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrl

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5yt6C (C:)
gsmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >5yt6C (C:)
smqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdy
niqkestlhlvlrlr

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5yt6E (E:)
gsmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >5yt6E (E:)
smqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdy
niqkestlhlvlrlr

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >5yt6G (G:)
gsmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >5yt6G (G:)
smqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdy
niqkestlhlvlrlr

  • Chain 'H':
    No sequence available.