PDB entry 5yro
View 5yro on RCSB PDB site
Description: RanL182A in complex with RanBP1-CRM1
Class: transport protein
Keywords: Active Ran, Complex, TRANSPORT PROTEIN
Deposited on
2017-11-09, released
2018-11-21
The last revision prior to the SCOPe 2.08 freeze date was dated
2018-11-21, with a file datestamp of
2018-11-16.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.22
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: GTP-binding nuclear protein ran
Species: Homo sapiens [TaxId:9606]
Gene: RAN, ARA24, OK/SW-cl.81
Database cross-references and differences (RAF-indexed):
- Uniprot P62826 (Start-215)
- engineered mutation (181)
Domains in SCOPe 2.08: d5yroa_ - Chain 'B':
Compound: Ran-specific GTPase-activating protein 1
Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
Gene: YRB1, CST20, HTN1, SFO1, YDR002W, YD8119.08
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5yrob_ - Chain 'C':
Compound: Exportin-1,Exportin-1
Species: Saccharomyces cerevisiae [TaxId:559292]
Gene: CRM1, KAP124, XPO1, YGR218W, G8514
Database cross-references and differences (RAF-indexed):
- Uniprot P30822 (2-377)
- Uniprot P30822 (378-End)
- engineered mutation (501)
- engineered mutation (503-505)
- see sequence details (986)
- Heterogens: GTP, MG, EDO, GOL, CL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5yroA (A:)
maaqgepqvqfklvlvgdggtgkttfvkrhltgefekkyvatlgvevhplvfhtnrgpik
fnvwdtagqekfgglrdgyyiqaqcaiimfdvtsrvtyknvpnwhrdlvrvcenipivlc
gnkvdikdrkvkaksivfhrkknlqyydisaksnynfekpflwlarkligdpnlefvamp
aaappevvmdpalaaqyehdlevaqttalpdedddl
Sequence, based on observed residues (ATOM records): (download)
>5yroA (A:)
qvqfklvlvgdggtgkttfvkrhltgefekkyvatlgvevhplvfhtnrgpikfnvwdta
gqekfgglrdgyyiqaqcaiimfdvtsrvtyknvpnwhrdlvrvcenipivlcgnkvdik
drkvkaksivfhrkknlqyydisaksnynfekpflwlarkligdpnlefvampaaappev
vmdpalaaqyehdlevaqttalpdedddl
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5yroB (B:)
dihfepvvhlekvdvktmeedeevlykvraklfrfdadakewkergtgdckflknkktnk
vrilmrrdktlkicanhiiapeytlkpnvgsdrswvyactadiaegeaeaftfairfgsk
enadkfkeefekaqeinkka
Sequence, based on observed residues (ATOM records): (download)
>5yroB (B:)
tmeedeevlykvraklfrfdadakewkergtgdckflknkktnkvrilmrrdktlkican
hiiapeytlkpnvgsdrswvyactadiaegeaeaftfairfgskenadkfkeefekaqei
nkk
- Chain 'C':
No sequence available.