PDB entry 5ynd

View 5ynd on RCSB PDB site
Description: Crystal structure of Pullulanase from Klebsiella pneumoniae complex at 1 mM gamma-cyclodextrin
Class: hydrolase
Keywords: HYDROLASE, alpha-amylase, pullulanase, Klebsiella pneumoniae, crystal, gamma-cyclodextrin, co-crystallization
Deposited on 2017-10-24, released 2018-10-24
The last revision prior to the SCOPe 2.07 freeze date was dated 2018-10-24, with a file datestamp of 2018-10-19.
Experiment type: XRAY
Resolution: 2.23 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DUF3372 domain-containing protein
    Species: Klebsiella pneumoniae [TaxId:573]
    Database cross-references and differences (RAF-indexed):
    • Uniprot W9BQ28 (Start-1101)
      • conflict (698)
    Domains in SCOPe 2.07: d5ynda1, d5ynda2, d5ynda3, d5ynda4, d5ynda5
  • Heterogens: CA, PEG, GOL, GLC, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5yndA (A:)
    mlrytchalflgslvllsgcdnssssstsgspgspgnpgnpgtpgtpdpqdvvvrlpdva
    vpgeavqasarqavihlvdiagitsstpadyatknlylwnnetcdalsapvadwndvstt
    ptgsdkygpywvipltkesgcinvivrdgtnklidsdlrvsfsdftdrtvsviagnsavy
    dsradafraafgvaladahwvdkttllwpggenkpivrlyyshsskvaadsngefsdkyv
    kltpttvnqqvsmrfphlasypafklpddvnvdellqgetvaiaaesdgilssatqvqta
    gvlddtyaaaaealsygaqltdsgvtfrvwaptaqqvelviysadkkviashpmtrdsas
    gawswqggsdlkgafyryamtvyhpqsrkveqyevtdpyahslstnseysqvvdlndsal
    kpegwdgltmphaqktkadlakmtiheshirdlsawdqtvpaelrgkylaltaqesnmvq
    hlkqlsasgvthiellpvfdlatvnefsdkvadiqqpfsrlcevnsavkssefagycdsg
    stveevltqlkqndskdnpqvqalntlvaqtdsynwgydpfhytvpegsyatdpegtari
    kefrtmiqaikqdlgmnvimdvvynhtnaagptdrtsvldkivpwyyqrlnettgsvesa
    tccsdsapehrmfakliadslavwttdykidgfrfdlmlyhpkaqilsawerikalnpdi
    yffgegwdsnqsdrfeiasqinlkgtgigtfsdrlrdavrgggpfdsgdalrqnqgvgsg
    agvlpnelttlsddqarhladltrlgmagnladfvlidkdgavkrgseidyngapggyaa
    dptevvnyvskhdnqtlwdmisykaaqeadldtrvrmqavslatvmlgqgiafdqqgsel
    lrsksftrdsydsgdwfnrvdyslqdnnynvgmprssddgsnydiiarvkdavatpgete
    lkqmtafyqeltalrkssplftlgdgatvmkrvdfrntgadqqtgllvmtiddgmqagas
    ldsrvdgivvainaapesrtlqdfagtslqlsaiqqaagdrslasgvqvaadgsvtlpaw
    svavlelpqgesqgaglpvssk
    

    Sequence, based on observed residues (ATOM records): (download)
    >5yndA (A:)
    dpqdvvvrlpdvavpgeavqasarqavihlvdiagitsstpadyatknlylwnnetcdal
    sapvadwndvsttptgsdkygpywvipltkesgcinvivrdgtnklidsdlrvsfsdftd
    rtvsviagnsavydsradafraafgvaladahwvdkttllwpggenkpivrlyyshsskv
    aadsngefsdkyvkltpttvnqqvsmrfphlasypafklpddvnvdellqgetvaiaaes
    dgilssatqvqtagvlddtyaaaaealsygaqltdsgvtfrvwaptaqqvelviysadkk
    viashpmtrdsasgawswqggsdlkgafyryamtvyhpqsrkveqyevtdpyahslstns
    eysqvvdlndsalkpegwdgltmphaqktkadlakmtiheshirdlsawdqtvpaelrgk
    ylaltaqesnmvqhlkqlsasgvthiellpvfdlatvnefsdkvadiqqpfsrlcevnsa
    vkssefagycdsgstveevltqlkqndskdnpqvqalntlvaqtdsynwgydpfhytvpe
    gsyatdpegtarikefrtmiqaikqdlgmnvimdvvynhtnaagptdrtsvldkivpwyy
    qrlnettgsvesatccsdsapehrmfakliadslavwttdykidgfrfdlmlyhpkaqil
    sawerikalnpdiyffgegwdsnqsdrfeiasqinlkgtgigtfsdrlrdavrgggpfds
    gdalrqnqgvgsgagvlpnelttlsddqarhladltrlgmagnladfvlidkdgavkrgs
    eidyngapggyaadptevvnyvskhdnqtlwdmisykaaqeadldtrvrmqavslatvml
    gqgiafdqqgsellrsksftrdsydsgdwfnrvdyslqdnnynvgmprssddgsnydiia
    rvkdavatpgetelkqmtafyqeltalrkssplftlgdgatvmkrvdfrntgadqqtgll
    vmtiddgmqagasldsrvdgivvainaapesrtlqdfagtslqlsaiqqaagdrslasgv
    qvaadgsvtlpawsvavlelpqgesqgaglpvssk