PDB entry 5yfy
View 5yfy on RCSB PDB site
Description: Plasmodium vivax SHMT bound with PLP-glycine and GS625
Class: transferase/inhibitor
Keywords: alpha and beta protein, Transferase, methyltransferase activity, Inhibitor, TRANSFERASE-INHIBITOR complex
Deposited on
2017-09-22, released
2018-09-26
The last revision prior to the SCOPe 2.08 freeze date was dated
2018-09-26, with a file datestamp of
2018-09-21.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.24
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: serine hydroxymethyltransferase
Species: Plasmodium vivax [TaxId:5855]
Gene: PVC01_140059500, PVP01_1453700, PVT01_140059000
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5yfya_ - Chain 'B':
Compound: serine hydroxymethyltransferase
Species: Plasmodium vivax [TaxId:5855]
Gene: PVC01_140059500, PVP01_1453700, PVT01_140059000
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5yfyb_ - Chain 'C':
Compound: serine hydroxymethyltransferase
Species: Plasmodium vivax [TaxId:5855]
Gene: PVC01_140059500, PVP01_1453700, PVT01_140059000
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5yfyc_ - Heterogens: PLG, 8UL, CL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>5yfyA (A:)
mfnnepleqidkelhdiladeekrqretinliasenltngavreclgnrvsnkysegypk
kryyggndfidkieelcqkraleafnvsdeewgvnvqplsgsaanvqalyalvgvkgkim
gmhlcsgghlthgffdekkkvsitsdmfesklykcnsqgyvdldavremalsfkpkviic
gytsyprdidyqqfrqicdevnaylfadishissfvacnilnnpflhadvvtttthkilr
gprsaliffnkkrnpgieqkinsavfpsfqggphnnkiaavacqlkevhspafkeytqqv
llnskalakaliskqidlvtngtdnhlivvdlrkfsitgsklqetcnainvslnkntips
dvdcvspsgvrigtpamttrgakekdmefiadvlaraikitvdlqeqygkklvdfkkglp
gnaqlqqlkqevvtwagalpfp
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>5yfyB (B:)
mfnnepleqidkelhdiladeekrqretinliasenltngavreclgnrvsnkysegypk
kryyggndfidkieelcqkraleafnvsdeewgvnvqplsgsaanvqalyalvgvkgkim
gmhlcsgghlthgffdekkkvsitsdmfesklykcnsqgyvdldavremalsfkpkviic
gytsyprdidyqqfrqicdevnaylfadishissfvacnilnnpflhadvvtttthkilr
gprsaliffnkkrnpgieqkinsavfpsfqggphnnkiaavacqlkevhspafkeytqqv
llnskalakaliskqidlvtngtdnhlivvdlrkfsitgsklqetcnainvslnkntips
dvdcvspsgvrigtpamttrgakekdmefiadvlaraikitvdlqeqygkklvdfkkglp
gnaqlqqlkqevvtwagalpfp
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>5yfyC (C:)
mfnnepleqidkelhdiladeekrqretinliasenltngavreclgnrvsnkysegypk
kryyggndfidkieelcqkraleafnvsdeewgvnvqplsgsaanvqalyalvgvkgkim
gmhlcsgghlthgffdekkkvsitsdmfesklykcnsqgyvdldavremalsfkpkviic
gytsyprdidyqqfrqicdevnaylfadishissfvacnilnnpflhadvvtttthkilr
gprsaliffnkkrnpgieqkinsavfpsfqggphnnkiaavacqlkevhspafkeytqqv
llnskalakaliskqidlvtngtdnhlivvdlrkfsitgsklqetcnainvslnkntips
dvdcvspsgvrigtpamttrgakekdmefiadvlaraikitvdlqeqygkklvdfkkglp
gnaqlqqlkqevvtwagalpfp