PDB entry 5ycc

View 5ycc on RCSB PDB site
Description: Crystal structure of Notothenia coriiceps adenylate kinase variant
Class: transferase
Keywords: phosphorylation, TRANSFERASE
Deposited on 2017-09-07, released 2018-09-12
The last revision prior to the SCOPe 2.07 freeze date was dated 2018-09-12, with a file datestamp of 2018-09-07.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: adenylate kinase
    Species: Notothenia coriiceps [TaxId:8208]
    Database cross-references and differences (RAF-indexed):
    • PDB 5YCC (Start-192)
    Domains in SCOPe 2.07: d5ycca_
  • Chain 'B':
    Compound: adenylate kinase
    Species: Notothenia coriiceps [TaxId:8208]
    Database cross-references and differences (RAF-indexed):
    • PDB 5YCC (Start-192)
    Domains in SCOPe 2.07: d5yccb_
  • Heterogens: AP5, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5yccA (A:)
    madkikdakiifvvggpgsgkgtqcekvvakygythlssgdllraevssgsergkqlqai
    mqkgelvpldtvldmikdamiakadvskgylidgyprevkqgeefekkigkpclllyida
    kgetmvkrlmkrgetsgraddneetikkrldlyykatepviafyegrgivrkvdselpvd
    evfkqvstaidal
    

    Sequence, based on observed residues (ATOM records): (download)
    >5yccA (A:)
    akiifvvggpgsgkgtqcekvvakygythlssgdllraevssgsergkqlqaimqkgelv
    pldtvldmikdamiakadvskgylidgyprevkqgeefekkigkpclllyidakgetmvk
    rlmkrgetsgraddneetikkrldlyykatepviafyegrgivrkvdselpvdevfkqvs
    taidal
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5yccB (B:)
    madkikdakiifvvggpgsgkgtqcekvvakygythlssgdllraevssgsergkqlqai
    mqkgelvpldtvldmikdamiakadvskgylidgyprevkqgeefekkigkpclllyida
    kgetmvkrlmkrgetsgraddneetikkrldlyykatepviafyegrgivrkvdselpvd
    evfkqvstaidal
    

    Sequence, based on observed residues (ATOM records): (download)
    >5yccB (B:)
    akiifvvggpgsgkgtqcekvvakygythlssgdllraevssgsergkqlqaimqkgelv
    pldtvldmikdamiakadvskgylidgyprevkqgeefekkigkpclllyidakgetmvk
    rlmkrgetsgraddneetikkrldlyykatepviafyegrgivrkvdselpvdevfkqvs
    taidal