PDB entry 5y9r
View 5y9r on RCSB PDB site
Description: Crystal structure of the oligomerization domain of NSP4 from rotavirus strain MF66
Class: viral protein
Keywords: antiparallel, tetramer, coiled-coil, nickel bound, VIRAL PROTEIN
Deposited on
2017-08-28, released
2018-09-05
The last revision prior to the SCOPe 2.08 freeze date was dated
2018-09-05, with a file datestamp of
2018-08-31.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.28
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Nonstructural protein 4
Species: Bovine rotavirus G10 [TaxId:195477]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5y9ra_ - Chain 'B':
Compound: Nonstructural protein 4
Species: Bovine rotavirus G10 [TaxId:195477]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5y9rb_ - Chain 'C':
Compound: Nonstructural protein 4
Species: Bovine rotavirus G10 [TaxId:195477]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5y9rc1, d5y9rc2 - Chain 'D':
Compound: Nonstructural protein 4
Species: Bovine rotavirus G10 [TaxId:195477]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5y9rd_ - Heterogens: NI, EDO, CD, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5y9rA (A:)
miekqmdrvvkemrrqlemidklttreieqvellkrihdklvvqst
Sequence, based on observed residues (ATOM records): (download)
>5y9rA (A:)
iekqmdrvvkemrrqlemidklttreieqvellkrihdklvvqst
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5y9rB (B:)
miekqmdrvvkemrrqlemidklttreieqvellkrihdklvvqst
Sequence, based on observed residues (ATOM records): (download)
>5y9rB (B:)
ekqmdrvvkemrrqlemidklttreieqvellkrihdklv
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5y9rC (C:)
miekqmdrvvkemrrqlemidklttreieqvellkrihdklvvqst
Sequence, based on observed residues (ATOM records): (download)
>5y9rC (C:)
miekqmdrvvkemrrqlemidklttreieqvellkrihdk
- Chain 'D':
Sequence, based on SEQRES records: (download)
>5y9rD (D:)
miekqmdrvvkemrrqlemidklttreieqvellkrihdklvvqst
Sequence, based on observed residues (ATOM records): (download)
>5y9rD (D:)
iekqmdrvvkemrrqlemidklttreieqvellkrihdklvvqs