PDB entry 5y9r

View 5y9r on RCSB PDB site
Description: Crystal structure of the oligomerization domain of NSP4 from rotavirus strain MF66
Class: viral protein
Keywords: antiparallel, tetramer, coiled-coil, nickel bound, VIRAL PROTEIN
Deposited on 2017-08-28, released 2018-09-05
The last revision prior to the SCOPe 2.07 freeze date was dated 2018-09-05, with a file datestamp of 2018-08-31.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nonstructural protein 4
    Species: Bovine rotavirus G10 [TaxId:195477]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5y9ra_
  • Chain 'B':
    Compound: Nonstructural protein 4
    Species: Bovine rotavirus G10 [TaxId:195477]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5y9rb_
  • Chain 'C':
    Compound: Nonstructural protein 4
    Species: Bovine rotavirus G10 [TaxId:195477]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6QT01 (1-End)
      • expression tag (0)
    Domains in SCOPe 2.07: d5y9rc1, d5y9rc2
  • Chain 'D':
    Compound: Nonstructural protein 4
    Species: Bovine rotavirus G10 [TaxId:195477]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5y9rd_
  • Heterogens: NI, EDO, CD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5y9rA (A:)
    miekqmdrvvkemrrqlemidklttreieqvellkrihdklvvqst
    

    Sequence, based on observed residues (ATOM records): (download)
    >5y9rA (A:)
    iekqmdrvvkemrrqlemidklttreieqvellkrihdklvvqst
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5y9rB (B:)
    miekqmdrvvkemrrqlemidklttreieqvellkrihdklvvqst
    

    Sequence, based on observed residues (ATOM records): (download)
    >5y9rB (B:)
    ekqmdrvvkemrrqlemidklttreieqvellkrihdklv
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >5y9rC (C:)
    miekqmdrvvkemrrqlemidklttreieqvellkrihdklvvqst
    

    Sequence, based on observed residues (ATOM records): (download)
    >5y9rC (C:)
    miekqmdrvvkemrrqlemidklttreieqvellkrihdk
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >5y9rD (D:)
    miekqmdrvvkemrrqlemidklttreieqvellkrihdklvvqst
    

    Sequence, based on observed residues (ATOM records): (download)
    >5y9rD (D:)
    iekqmdrvvkemrrqlemidklttreieqvellkrihdklvvqs