PDB entry 5y5p
View 5y5p on RCSB PDB site
Description: Crystal structure of the dUTPase of white spot syndrome virus in complex with dU,PPi and Mg2+
Class: viral protein
Keywords: dUTPase, WSSV, pyrophosphatase, dUTP, VIRAL PROTEIN
Deposited on
2017-08-09, released
2017-12-06
The last revision prior to the SCOPe 2.06 freeze date was dated
2017-12-06, with a file datestamp of
2017-12-01.
Experiment type: XRAY
Resolution: 2.03 Å
R-factor: N/A
AEROSPACI score: 0.3
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Wsv112
Species: White spot syndrome virus (isolate Shrimp/China/Tongan/1996) [TaxId:654913]
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: Wsv112
Species: White spot syndrome virus (isolate Shrimp/China/Tongan/1996) [TaxId:654913]
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: Wsv112
Species: White spot syndrome virus (isolate Shrimp/China/Tongan/1996) [TaxId:654913]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5y5pc_ - Chain 'D':
Compound: Wsv112
Species: White spot syndrome virus (isolate Shrimp/China/Tongan/1996) [TaxId:654913]
Database cross-references and differences (RAF-indexed):
- Chain 'E':
Compound: Wsv112
Species: White spot syndrome virus (isolate Shrimp/China/Tongan/1996) [TaxId:654913]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5y5pe_ - Chain 'F':
Compound: Wsv112
Species: White spot syndrome virus (isolate Shrimp/China/Tongan/1996) [TaxId:654913]
Database cross-references and differences (RAF-indexed):
- Heterogens: DUR, MG, POP, HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
No sequence available.
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5y5pC (C:)
snamdssasvvfmrfappgeetalpprratpgsvaydlfpseemdiepmglakistgygi
dkfpdgcygqivsrsgmtwknntsvptgtidvdyrgelkvilrnhsaeksvpirkgtsia
qliflrycdveeeqivyinettgertiidssskkdnknqarsvrgtggfgstdn
Sequence, based on observed residues (ATOM records): (download)
>5y5pC (C:)
dssasvvfmrfappgeetalpprratpgsvaydlfpseemdiepmglakistgygidkfp
dgcygqivsrsgmtwknntsvptgtidvdyrgelkvilrnhsaeksvpirkgtsiaqlif
lrycdveeeqivyinettgertiidsssk
- Chain 'D':
No sequence available.
- Chain 'E':
Sequence, based on SEQRES records: (download)
>5y5pE (E:)
snamdssasvvfmrfappgeetalpprratpgsvaydlfpseemdiepmglakistgygi
dkfpdgcygqivsrsgmtwknntsvptgtidvdyrgelkvilrnhsaeksvpirkgtsia
qliflrycdveeeqivyinettgertiidssskkdnknqarsvrgtggfgstdn
Sequence, based on observed residues (ATOM records): (download)
>5y5pE (E:)
ssasvvfmrfappgeetalpprratpgsvaydlfpseemdiepmglakistgygidkfpd
gcygqivsrsgmtwknntsvptgtidvdyrgelkvilrnhsaeksvpirkgtsiaqlifl
rycdveeeqivyinettgertiidssskkdnknqar
- Chain 'F':
No sequence available.