PDB entry 5y3x

View 5y3x on RCSB PDB site
Description: Crystal structure of endo-1,4-beta-xylanase from Caldicellulosiruptor owensensis
Class: hydrolase
Keywords: GH10 xylanase, Thermostability, HYDROLASE
Deposited on 2017-07-31, released 2017-12-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-01-24, with a file datestamp of 2018-01-19.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Beta-xylanase
    Species: Caldicellulosiruptor owensensis OL [TaxId:632518]
    Gene: Calow_0124
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5y3xa_
  • Chain 'B':
    Compound: Beta-xylanase
    Species: Caldicellulosiruptor owensensis OL [TaxId:632518]
    Gene: Calow_0124
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5y3xb_
  • Chain 'C':
    Compound: Beta-xylanase
    Species: Caldicellulosiruptor owensensis OL [TaxId:632518]
    Gene: Calow_0124
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5y3xc_
  • Chain 'D':
    Compound: Beta-xylanase
    Species: Caldicellulosiruptor owensensis OL [TaxId:632518]
    Gene: Calow_0124
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5y3xd_
  • Chain 'E':
    Compound: Beta-xylanase
    Species: Caldicellulosiruptor owensensis OL [TaxId:632518]
    Gene: Calow_0124
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5y3xe_
  • Chain 'F':
    Compound: Beta-xylanase
    Species: Caldicellulosiruptor owensensis OL [TaxId:632518]
    Gene: Calow_0124
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5y3xf_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5y3xA (A:)
mgsshhhhhhssglvprgshmseyqdktipslaekykeyfkigaavtvkdlegvhgeilv
khfnsltpendmkferihpdehrynfdavdkmkefaiknnmkmrghtfvwhnqtpewvfk
dregndvsrellierlrehiktvcdryrdivyawdvvneavedktekllrdsnwrriigd
dyikiafeiakeyagegklfyndynnempyklektykllkelidketpidgigiqahwni
wdknlidnlkraiemyaslgleiqiteldmsvfefedrrtdllepaeemmelqakvyedv
fkvfreykgvitsvtfwgisdkhtwkdnfpvigrkdwpllfdvngkpkeaffrivnf

    Sequence, based on observed residues (ATOM records): (download) 
    >5y3xA (A:)
ipslaekykeyfkigaavtvkdlegvhgeilvkhfnsltpendmkferihpdehrynfda
vdkmkefaiknnmkmrghtfvwhnqtpewvfkdregndvsrellierlrehiktvcdryr
divyawdvvneavedktekllrdsnwrriigddyikiafeiakeyagegklfyndynnem
pyklektykllkelidketpidgigiqahwniwdknlidnlkraiemyaslgleiqitel
dmsvfefedrrtdllepaeemmelqakvyedvfkvfreykgvitsvtfwgisdkhtwkdn
fpvigrkdwpllfdvngkpkeaffrivnf

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5y3xB (B:)
mgsshhhhhhssglvprgshmseyqdktipslaekykeyfkigaavtvkdlegvhgeilv
khfnsltpendmkferihpdehrynfdavdkmkefaiknnmkmrghtfvwhnqtpewvfk
dregndvsrellierlrehiktvcdryrdivyawdvvneavedktekllrdsnwrriigd
dyikiafeiakeyagegklfyndynnempyklektykllkelidketpidgigiqahwni
wdknlidnlkraiemyaslgleiqiteldmsvfefedrrtdllepaeemmelqakvyedv
fkvfreykgvitsvtfwgisdkhtwkdnfpvigrkdwpllfdvngkpkeaffrivnf

    Sequence, based on observed residues (ATOM records): (download) 
    >5y3xB (B:)
ipslaekykeyfkigaavtvkdlegvhgeilvkhfnsltpendmkferihpdehrynfda
vdkmkefaiknnmkmrghtfvwhnqtpewvfkdregndvsrellierlrehiktvcdryr
divyawdvvneavedktekllrdsnwrriigddyikiafeiakeyagegklfyndynnem
pyklektykllkelidketpidgigiqahwniwdknlidnlkraiemyaslgleiqitel
dmsvfefedrrtdllepaeemmelqakvyedvfkvfreykgvitsvtfwgisdkhtwkdn
fpvigrkdwpllfdvngkpkeaffrivnf

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5y3xC (C:)
mgsshhhhhhssglvprgshmseyqdktipslaekykeyfkigaavtvkdlegvhgeilv
khfnsltpendmkferihpdehrynfdavdkmkefaiknnmkmrghtfvwhnqtpewvfk
dregndvsrellierlrehiktvcdryrdivyawdvvneavedktekllrdsnwrriigd
dyikiafeiakeyagegklfyndynnempyklektykllkelidketpidgigiqahwni
wdknlidnlkraiemyaslgleiqiteldmsvfefedrrtdllepaeemmelqakvyedv
fkvfreykgvitsvtfwgisdkhtwkdnfpvigrkdwpllfdvngkpkeaffrivnf

    Sequence, based on observed residues (ATOM records): (download) 
    >5y3xC (C:)
ipslaekykeyfkigaavtvkdlegvhgeilvkhfnsltpendmkferihpdehrynfda
vdkmkefaiknnmkmrghtfvwhnqtpewvfkdregndvsrellierlrehiktvcdryr
divyawdvvneavedktekllrdsnwrriigddyikiafeiakeyagegklfyndynnem
pyklektykllkelidketpidgigiqahwniwdknlidnlkraiemyaslgleiqitel
dmsvfefedrrtdllepaeemmelqakvyedvfkvfreykgvitsvtfwgisdkhtwkdn
fpvigrkdwpllfdvngkpkeaffrivnf

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5y3xD (D:)
mgsshhhhhhssglvprgshmseyqdktipslaekykeyfkigaavtvkdlegvhgeilv
khfnsltpendmkferihpdehrynfdavdkmkefaiknnmkmrghtfvwhnqtpewvfk
dregndvsrellierlrehiktvcdryrdivyawdvvneavedktekllrdsnwrriigd
dyikiafeiakeyagegklfyndynnempyklektykllkelidketpidgigiqahwni
wdknlidnlkraiemyaslgleiqiteldmsvfefedrrtdllepaeemmelqakvyedv
fkvfreykgvitsvtfwgisdkhtwkdnfpvigrkdwpllfdvngkpkeaffrivnf

    Sequence, based on observed residues (ATOM records): (download) 
    >5y3xD (D:)
ipslaekykeyfkigaavtvkdlegvhgeilvkhfnsltpendmkferihpdehrynfda
vdkmkefaiknnmkmrghtfvwhnqtpewvfkdregndvsrellierlrehiktvcdryr
divyawdvvneavedktekllrdsnwrriigddyikiafeiakeyagegklfyndynnem
pyklektykllkelidketpidgigiqahwniwdknlidnlkraiemyaslgleiqitel
dmsvfefedrrtdllepaeemmelqakvyedvfkvfreykgvitsvtfwgisdkhtwkdn
fpvigrkdwpllfdvngkpkeaffrivnf

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5y3xE (E:)
mgsshhhhhhssglvprgshmseyqdktipslaekykeyfkigaavtvkdlegvhgeilv
khfnsltpendmkferihpdehrynfdavdkmkefaiknnmkmrghtfvwhnqtpewvfk
dregndvsrellierlrehiktvcdryrdivyawdvvneavedktekllrdsnwrriigd
dyikiafeiakeyagegklfyndynnempyklektykllkelidketpidgigiqahwni
wdknlidnlkraiemyaslgleiqiteldmsvfefedrrtdllepaeemmelqakvyedv
fkvfreykgvitsvtfwgisdkhtwkdnfpvigrkdwpllfdvngkpkeaffrivnf

    Sequence, based on observed residues (ATOM records): (download) 
    >5y3xE (E:)
ipslaekykeyfkigaavtvkdlegvhgeilvkhfnsltpendmkferihpdehrynfda
vdkmkefaiknnmkmrghtfvwhnqtpewvfkdregndvsrellierlrehiktvcdryr
divyawdvvneavedktekllrdsnwrriigddyikiafeiakeyagegklfyndynnem
pyklektykllkelidketpidgigiqahwniwdknlidnlkraiemyaslgleiqitel
dmsvfefedrrtdllepaeemmelqakvyedvfkvfreykgvitsvtfwgisdkhtwkdn
fpvigrkdwpllfdvngkpkeaffrivnf

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5y3xF (F:)
mgsshhhhhhssglvprgshmseyqdktipslaekykeyfkigaavtvkdlegvhgeilv
khfnsltpendmkferihpdehrynfdavdkmkefaiknnmkmrghtfvwhnqtpewvfk
dregndvsrellierlrehiktvcdryrdivyawdvvneavedktekllrdsnwrriigd
dyikiafeiakeyagegklfyndynnempyklektykllkelidketpidgigiqahwni
wdknlidnlkraiemyaslgleiqiteldmsvfefedrrtdllepaeemmelqakvyedv
fkvfreykgvitsvtfwgisdkhtwkdnfpvigrkdwpllfdvngkpkeaffrivnf

    Sequence, based on observed residues (ATOM records): (download) 
    >5y3xF (F:)
ipslaekykeyfkigaavtvkdlegvhgeilvkhfnsltpendmkferihpdehrynfda
vdkmkefaiknnmkmrghtfvwhnqtpewvfkdregndvsrellierlrehiktvcdryr
divyawdvvneavedktekllrdsnwrriigddyikiafeiakeyagegklfyndynnem
pyklektykllkelidketpidgigiqahwniwdknlidnlkraiemyaslgleiqitel
dmsvfefedrrtdllepaeemmelqakvyedvfkvfreykgvitsvtfwgisdkhtwkdn
fpvigrkdwpllfdvngkpkeaffrivnf