PDB entry 5y2j

View 5y2j on RCSB PDB site
Description: Crystal structure of the oligomerization domain of NSP4 from rotavirus strain MF66
Class: viral protein
Keywords: Antiparallel, tetramer, Coiled-coil, VIRAL PROTEIN
Deposited on 2017-07-26, released 2018-03-14
The last revision prior to the SCOPe 2.07 freeze date was dated 2018-03-14, with a file datestamp of 2018-03-09.
Experiment type: XRAY
Resolution: 2.55 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nonstructural protein 4
    Species: Bovine rotavirus G10 [TaxId:195477]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5y2ja_
  • Chain 'B':
    Compound: Nonstructural protein 4
    Species: Bovine rotavirus G10 [TaxId:195477]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5y2jb_
  • Chain 'C':
    Compound: Nonstructural protein 4
    Species: Bovine rotavirus G10 [TaxId:195477]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6QT01 (1-End)
      • expression tag (0)
    Domains in SCOPe 2.07: d5y2jc1, d5y2jc2
  • Chain 'D':
    Compound: Nonstructural protein 4
    Species: Bovine rotavirus G10 [TaxId:195477]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6QT01 (1-End)
      • expression tag (0)
    Domains in SCOPe 2.07: d5y2jd1, d5y2jd2
  • Heterogens: EDO, NI, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5y2jA (A:)
    miekqmdrvvkemrrqlemidklttreieqvellkrihdklvvqstgeidmtk
    

    Sequence, based on observed residues (ATOM records): (download)
    >5y2jA (A:)
    ekqmdrvvkemrrqlemidklttreieqvellkrihdklvvqs
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5y2jB (B:)
    miekqmdrvvkemrrqlemidklttreieqvellkrihdklvvqstgeidmtk
    

    Sequence, based on observed residues (ATOM records): (download)
    >5y2jB (B:)
    vvkemrrqlemidklttreieqvellkrihdklvvqstgei
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >5y2jC (C:)
    miekqmdrvvkemrrqlemidklttreieqvellkrihdklvvqstgeidmtk
    

    Sequence, based on observed residues (ATOM records): (download)
    >5y2jC (C:)
    miekqmdrvvkemrrqlemidklttreieqvellkrihd
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >5y2jD (D:)
    miekqmdrvvkemrrqlemidklttreieqvellkrihdklvvqstgeidmtk
    

    Sequence, based on observed residues (ATOM records): (download)
    >5y2jD (D:)
    miekqmdrvvkemrrqlemidklttreieqvellkrihdklvvq