PDB entry 5y2h

View 5y2h on RCSB PDB site
Description: Crystal structure of the oligomerization domain of NSP4 from the rotavirus strain MF66
Class: viral protein
Keywords: Antiparallel tetramer NSP4 Rotavirus Coiled-coil MF66, VIRAL PROTEIN
Deposited on 2017-07-25, released 2018-03-14
The last revision prior to the SCOPe 2.07 freeze date was dated 2018-03-14, with a file datestamp of 2018-03-09.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nonstructural protein 4
    Species: Bovine rotavirus G10 [TaxId:195477]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5y2ha_
  • Chain 'B':
    Compound: Nonstructural protein 4
    Species: Bovine rotavirus G10 [TaxId:195477]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5y2hb_
  • Chain 'C':
    Compound: Nonstructural protein 4
    Species: Bovine rotavirus G10 [TaxId:195477]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5y2hc_
  • Chain 'D':
    Compound: Nonstructural protein 4
    Species: Bovine rotavirus G10 [TaxId:195477]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5y2hd_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5y2hA (A:)
    ttkdeiekqmdrvvkemrrqlemidklttreieqvellkrihdklvvqstg
    

    Sequence, based on observed residues (ATOM records): (download)
    >5y2hA (A:)
    ttkdeiekqmdrvvkemrrqlemidklttreieqvellkrihdklvvq
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5y2hB (B:)
    ttkdeiekqmdrvvkemrrqlemidklttreieqvellkrihdklvvqstg
    

    Sequence, based on observed residues (ATOM records): (download)
    >5y2hB (B:)
    kdeiekqmdrvvkemrrqlemidklttreieqvellkrihdklvvq
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >5y2hC (C:)
    ttkdeiekqmdrvvkemrrqlemidklttreieqvellkrihdklvvqstg
    

    Sequence, based on observed residues (ATOM records): (download)
    >5y2hC (C:)
    deiekqmdrvvkemrrqlemidklttreieqvellkrihdklvvqs
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >5y2hD (D:)
    ttkdeiekqmdrvvkemrrqlemidklttreieqvellkrihdklvvqstg
    

    Sequence, based on observed residues (ATOM records): (download)
    >5y2hD (D:)
    kdeiekqmdrvvkemrrqlemidklttreieqvellkrihdklvvqst