PDB entry 5y2e

View 5y2e on RCSB PDB site
Description: Crystal structure of the oligomerization domain of NSP4 from the rotavirus strain NCDV
Class: viral protein
Keywords: Antiparallel tetramer NSP4 Rotavirus Coiled-coil, VIRAL PROTEIN
Deposited on 2017-07-25, released 2018-03-14
The last revision prior to the SCOPe 2.07 freeze date was dated 2018-03-14, with a file datestamp of 2018-03-09.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Non-structural glycoprotein 4
    Species: Rotavirus A (strain RVA/Cow/United States/NCDV-Lincoln/1969/G6P6[1]) [TaxId:36439]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P08434 (1-End)
      • expression tag (0)
      • engineered mutation (26)
    Domains in SCOPe 2.07: d5y2ea1, d5y2ea2
  • Chain 'B':
    Compound: Non-structural glycoprotein 4
    Species: Rotavirus A (strain RVA/Cow/United States/NCDV-Lincoln/1969/G6P6[1]) [TaxId:36439]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P08434 (1-End)
      • expression tag (0)
      • engineered mutation (26)
    Domains in SCOPe 2.07: d5y2eb1, d5y2eb2
  • Chain 'C':
    Compound: Non-structural glycoprotein 4
    Species: Rotavirus A (strain RVA/Cow/United States/NCDV-Lincoln/1969/G6P6[1]) [TaxId:36439]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P08434 (1-46)
      • expression tag (0)
      • engineered mutation (26)
    Domains in SCOPe 2.07: d5y2ec1, d5y2ec2
  • Chain 'D':
    Compound: Non-structural glycoprotein 4
    Species: Rotavirus A (strain RVA/Cow/United States/NCDV-Lincoln/1969/G6P6[1]) [TaxId:36439]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P08434 (1-End)
      • expression tag (0)
      • engineered mutation (26)
    Domains in SCOPe 2.07: d5y2ed1, d5y2ed2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5y2eA (A:)
    miekqmdrvvkemrrqlemidklttrgieqvellkrihdklmiravd
    

    Sequence, based on observed residues (ATOM records): (download)
    >5y2eA (A:)
    miekqmdrvvkemrrqlemidklttrgieqvellkrihdklmira
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5y2eB (B:)
    miekqmdrvvkemrrqlemidklttrgieqvellkrihdklmiravd
    

    Sequence, based on observed residues (ATOM records): (download)
    >5y2eB (B:)
    miekqmdrvvkemrrqlemidklttrgieqvellkrihdklmir
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5y2eC (C:)
    miekqmdrvvkemrrqlemidklttrgieqvellkrihdklmiravd
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >5y2eD (D:)
    miekqmdrvvkemrrqlemidklttrgieqvellkrihdklmiravd
    

    Sequence, based on observed residues (ATOM records): (download)
    >5y2eD (D:)
    miekqmdrvvkemrrqlemidklttrgieqvellkrihdklmirav