PDB entry 5xux

View 5xux on RCSB PDB site
Description: Crystal structure of Rib7 from Methanosarcina mazei
Class: oxidoreductase
Keywords: Rib7, riboflavin biosynthesis, OXIDOREDUCTASE
Deposited on 2017-06-26, released 2018-07-04
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-01-16, with a file datestamp of 2019-01-11.
Experiment type: XRAY
Resolution: 2.27 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: conserved protein
    Species: Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) [TaxId:192952]
    Gene: MM_0826
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8PYN5 (12-239)
      • expression tag (2-11)
    Domains in SCOPe 2.08: d5xuxa1, d5xuxa2
  • Chain 'B':
    Compound: conserved protein
    Species: Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) [TaxId:192952]
    Gene: MM_0826
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5xuxb_
  • Chain 'C':
    Compound: conserved protein
    Species: Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) [TaxId:192952]
    Gene: MM_0826
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5xuxc_
  • Chain 'D':
    Compound: conserved protein
    Species: Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) [TaxId:192952]
    Gene: MM_0826
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5xuxd_
  • Chain 'E':
    Compound: conserved protein
    Species: Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) [TaxId:192952]
    Gene: MM_0826
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5xuxe_
  • Chain 'F':
    Compound: conserved protein
    Species: Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) [TaxId:192952]
    Gene: MM_0826
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8PYN5 (12-239)
      • expression tag (2-11)
    Domains in SCOPe 2.08: d5xuxf1, d5xuxf2
  • Heterogens: NAP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5xuxA (A:)
    mrgshhhhhhgsmdrpfifinsamsadgklstkerkqvkisgkldfermdelrahadaim
    vgigtvladdpsltvksperkaarkaagksenpvrvvvdssartplnadifkkgeglrii
    avsnsapeekirmleekalviktgafrvdltelaaklkemginslmveggatlnwgmlsa
    glvdevytfvgnliiggktaptftdgegftenellglelssaekiedgillkwkvkgkkn
    

    Sequence, based on observed residues (ATOM records): (download)
    >5xuxA (A:)
    gshhhhhhgsmdrpfifinsamsadgklstkerkqvkisgkldfermdelrahadaimvg
    igtvladdpsltvksperkaarkaagksenpvrvvvdssartplnadifkkgeglriiav
    snsapeekirmleekalviktgafrvdltelaaklkemginslmveggatlnwgmlsagl
    vdevytfvgnliiggktaptftdgegftenellglelssaekiedgillkwkvkgkkn
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5xuxB (B:)
    mrgshhhhhhgsmdrpfifinsamsadgklstkerkqvkisgkldfermdelrahadaim
    vgigtvladdpsltvksperkaarkaagksenpvrvvvdssartplnadifkkgeglrii
    avsnsapeekirmleekalviktgafrvdltelaaklkemginslmveggatlnwgmlsa
    glvdevytfvgnliiggktaptftdgegftenellglelssaekiedgillkwkvkgkkn
    

    Sequence, based on observed residues (ATOM records): (download)
    >5xuxB (B:)
    mdrpfifinsamsadgklstkerkqvkisgkldfermdelrahadaimvgigtvladdps
    ltvksperkaarkaagksenpvrvvvdssartplnadifkkgeglriiavsnsapeekir
    mleekalviktgafrvdltelaaklkemginslmveggatlnwgmlsaglvdevytfvgn
    liiggktaptftdgegftenellglelssaekiedgillkwkvk
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >5xuxC (C:)
    mrgshhhhhhgsmdrpfifinsamsadgklstkerkqvkisgkldfermdelrahadaim
    vgigtvladdpsltvksperkaarkaagksenpvrvvvdssartplnadifkkgeglrii
    avsnsapeekirmleekalviktgafrvdltelaaklkemginslmveggatlnwgmlsa
    glvdevytfvgnliiggktaptftdgegftenellglelssaekiedgillkwkvkgkkn
    

    Sequence, based on observed residues (ATOM records): (download)
    >5xuxC (C:)
    drpfifinsamsadgklstkerkqvkisgkldfermdelrahadaimvgigtvladdpsl
    tvksperkaarkaagksenpvrvvvdssartplnadifkkgeglriiavsnsapeekirm
    leekalviktgafrvdltelaaklkemginslmveggatlnwgmlsaglvdevytfvgnl
    iiggktaptftdgegftenellglelssaekiedgillkwkvkg
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >5xuxD (D:)
    mrgshhhhhhgsmdrpfifinsamsadgklstkerkqvkisgkldfermdelrahadaim
    vgigtvladdpsltvksperkaarkaagksenpvrvvvdssartplnadifkkgeglrii
    avsnsapeekirmleekalviktgafrvdltelaaklkemginslmveggatlnwgmlsa
    glvdevytfvgnliiggktaptftdgegftenellglelssaekiedgillkwkvkgkkn
    

    Sequence, based on observed residues (ATOM records): (download)
    >5xuxD (D:)
    drpfifinsamsadgklstkerkqvkisgkldfermdelrahadaimvgigtvladdpsl
    tvksperkaarkaagksenpvrvvvdssartplnadifkkgeglriiavsnsapeekirm
    leekalviktgafrvdltelaaklkemginslmveggatlnwgmlsaglvdevytfvgnl
    iiggktaptftdgegftenellglelssaekiedgillkwkvk
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >5xuxE (E:)
    mrgshhhhhhgsmdrpfifinsamsadgklstkerkqvkisgkldfermdelrahadaim
    vgigtvladdpsltvksperkaarkaagksenpvrvvvdssartplnadifkkgeglrii
    avsnsapeekirmleekalviktgafrvdltelaaklkemginslmveggatlnwgmlsa
    glvdevytfvgnliiggktaptftdgegftenellglelssaekiedgillkwkvkgkkn
    

    Sequence, based on observed residues (ATOM records): (download)
    >5xuxE (E:)
    drpfifinsamsadgklstkerkqvkisgkldfermdelrahadaimvgigtvladdpsl
    tvksperkaarkaagksenpvrvvvdssartplnadifkkgeglriiavsnsapeekirm
    leekalviktgafrvdltelaaklkemginslmveggatlnwgmlsaglvdevytfvgnl
    iiggktaptftdgegftenellglelssaekiedgillkwkvk
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >5xuxF (F:)
    mrgshhhhhhgsmdrpfifinsamsadgklstkerkqvkisgkldfermdelrahadaim
    vgigtvladdpsltvksperkaarkaagksenpvrvvvdssartplnadifkkgeglrii
    avsnsapeekirmleekalviktgafrvdltelaaklkemginslmveggatlnwgmlsa
    glvdevytfvgnliiggktaptftdgegftenellglelssaekiedgillkwkvkgkkn
    

    Sequence, based on observed residues (ATOM records): (download)
    >5xuxF (F:)
    gshhhhhhgsmdrpfifinsamsadgklstkerkqvkisgkldfermdelrahadaimvg
    igtvladdpsltvksperkaarkaagksenpvrvvvdssartplnadifkkgeglriiav
    snsapeekirmleekalviktgafrvdltelaaklkemginslmveggatlnwgmlsagl
    vdevytfvgnliiggktaptftdgegftenellglelssaekiedgillkwkvkgkkn