PDB entry 5xuq
View 5xuq on RCSB PDB site
Description: Crystal structure of VDR-LBD complexed with an antagonist, 2-methylidene-19,26,27-trinor-22-(S)-butyl-1-hydroxy-25-oxo-25-(1H-pyrrol-2-yl)- vitamin D3
Class: transcription
Keywords: Vitamin D receptor antagonist helix 10/11, TRANSCRIPTION
Deposited on
2017-06-24, released
2018-06-27
The last revision prior to the SCOPe 2.08 freeze date was dated
2018-06-27, with a file datestamp of
2018-06-22.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.17
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Vitamin D3 receptor
Species: Rattus norvegicus [TaxId:10116]
Gene: Vdr, Nr1i1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5xuqa_ - Chain 'C':
Compound: Mediator of RNA polymerase II transcription subunit 1
Species: Homo sapiens [TaxId:9606]
Gene: MED1, ARC205, CRSP1, CRSP200, DRIP205, DRIP230, PBP, PPARBP, PPARGBP, RB18A, TRAP220, TRIP2
Database cross-references and differences (RAF-indexed):
- Heterogens: 8FF, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5xuqA (A:)
gshmgspnsplkdslrpklseeqqhiiailldahhktydptyadfrdfrppvrmdgstgs
vtldlsplsmlphladlvsysiqkvigfakmipgfrdltsddqivllkssaievimlrsn
qsftmddmswdcgsqdykydvtdvskaghtlelieplikfqvglkklnlheeehvllmai
civspdrpgvqdaklveaiqdrlsntlqtyircrhpppgshqlyakmiqkladlrslnee
hskqyrslsfqpensmkltplvlevfgneis
Sequence, based on observed residues (ATOM records): (download)
>5xuqA (A:)
klseeqqhiiailldahhktydptyadfrdfrppvrsplsmlphladlvsysiqkvigfa
kmipgfrdltsddqivllkssaievimlrsnqsftmddmswdcgsqdykydvtdvskagh
tlelieplikfqvglkklnlheeehvllmaicivspdrpgvqdaklveaiqdrlsntlqt
yircrhpppgshqlyakmiqkladlrslneehskqpensmkltplvlevfg
- Chain 'C':
No sequence available.