PDB entry 5xkc

View 5xkc on RCSB PDB site
Description: Crystal structure of dibenzothiophene sulfone monooxygenase BdsA at 2.2 angstrome
Class: oxidoreductase
Keywords: dibenzothiophene desulfurization enzyme, monooxygenase, OXIDOREDUCTASE
Deposited on 2017-05-07, released 2018-05-09
The last revision prior to the SCOPe 2.07 freeze date was dated 2018-05-09, with a file datestamp of 2018-05-04.
Experiment type: XRAY
Resolution: 2.21 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Dibenzothiophene desulfurization enzyme A
    Species: Bacillus subtilis [TaxId:1423]
    Gene: bdsA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5xkca_
  • Chain 'B':
    Compound: Dibenzothiophene desulfurization enzyme A
    Species: Bacillus subtilis [TaxId:1423]
    Gene: bdsA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5xkcb_
  • Chain 'C':
    Compound: Dibenzothiophene desulfurization enzyme A
    Species: Bacillus subtilis [TaxId:1423]
    Gene: bdsA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5xkcc_
  • Chain 'D':
    Compound: Dibenzothiophene desulfurization enzyme A
    Species: Bacillus subtilis [TaxId:1423]
    Gene: bdsA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5xkcd_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5xkcA (A:)
    maeqrqlhlagffsagnvthahgawrhvgatngfltgefykqiartlergkfdllflpdg
    laiedsygdnletgvglggqgavaleptsviatmaavtqrlglgatvsttyyppyhvarv
    fatldnlsdgriswnvvtslndsearnfgvdehlehdirydradefleavkklwsswsed
    allldkvggrfadpkkvqyvnhrgrwlsvrgplqvprsrqgepvilqaglsprgrrfagr
    waeavfsvspnldimravyqdikahvaaagrdpeqtkvftavmpvlgeteqvarerleyl
    nslvhpevglstlsshsglnlskypldtkfsdivadlgdrhvptmlqmfsavagggadlt
    laelgrrygtnvgfvpqwagtaeqiadqlishfeagaadgfiispaylpgiyeefvdqvv
    pllqqrgvfrteyegttlrehlglahpevgsir
    

    Sequence, based on observed residues (ATOM records): (download)
    >5xkcA (A:)
    rqlhlagffsagnvthahgawrhvgatngfltgefykqiartlergkfdllflpdglaie
    dsygdnletgvglggqgavaleptsviatmaavtqrlglgatvsttyyppyhvarvfatl
    dnlsdgriswnvvtslndsearnfgvdehlehdirydradefleavkklwsswsedalll
    dkvggrfadpkkvqyvnhrgrwlsvrgplqvprsrqgepvilqaglsprgrrfagrwaea
    vfsvspnldimravyqdikahvaaagrdpeqtkvftavmpvlgeteqvarerleylnslv
    hpevglstlsshsglnlskypldtkfsdivadlgdrhvptmlqmfsavagggadltlael
    grrygtnvgfvpqwagtaeqiadqlishfeagaadgfiispaylpgiyeefvdqvvpllq
    qrgvfrteyegttlrehlglahpevg
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5xkcB (B:)
    maeqrqlhlagffsagnvthahgawrhvgatngfltgefykqiartlergkfdllflpdg
    laiedsygdnletgvglggqgavaleptsviatmaavtqrlglgatvsttyyppyhvarv
    fatldnlsdgriswnvvtslndsearnfgvdehlehdirydradefleavkklwsswsed
    allldkvggrfadpkkvqyvnhrgrwlsvrgplqvprsrqgepvilqaglsprgrrfagr
    waeavfsvspnldimravyqdikahvaaagrdpeqtkvftavmpvlgeteqvarerleyl
    nslvhpevglstlsshsglnlskypldtkfsdivadlgdrhvptmlqmfsavagggadlt
    laelgrrygtnvgfvpqwagtaeqiadqlishfeagaadgfiispaylpgiyeefvdqvv
    pllqqrgvfrteyegttlrehlglahpevgsir
    

    Sequence, based on observed residues (ATOM records): (download)
    >5xkcB (B:)
    rqlhlagffsagnvthahgawrhvgatngfltgefykqiartlergkfdllflpdglaie
    dsygdnletgvglggqgavaleptsviatmaavtqrlglgatvsttyyppyhvarvfatl
    dnlsdgriswnvvtslndsearnfgvdehlehdirydradefleavkklwsswsedalll
    dkvggrfadpkkvqyvnhrgrwlsvrgplqvprsrqgepvilqaglsprgrrfagrwaea
    vfsvspnldimravyqdikahvaaagrdpeqtkvftavmpvlgeteqvarerleylnslv
    hpevglstlsshsglnlskypldtkfsdivadlgdrhvptmlqmfsavagggadltlael
    grrygtnvgfvpqwagtaeqiadqlishfeagaadgfiispaylpgiyeefvdqvvpllq
    qrgvfrteyegttlrehlglahpevg
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >5xkcC (C:)
    maeqrqlhlagffsagnvthahgawrhvgatngfltgefykqiartlergkfdllflpdg
    laiedsygdnletgvglggqgavaleptsviatmaavtqrlglgatvsttyyppyhvarv
    fatldnlsdgriswnvvtslndsearnfgvdehlehdirydradefleavkklwsswsed
    allldkvggrfadpkkvqyvnhrgrwlsvrgplqvprsrqgepvilqaglsprgrrfagr
    waeavfsvspnldimravyqdikahvaaagrdpeqtkvftavmpvlgeteqvarerleyl
    nslvhpevglstlsshsglnlskypldtkfsdivadlgdrhvptmlqmfsavagggadlt
    laelgrrygtnvgfvpqwagtaeqiadqlishfeagaadgfiispaylpgiyeefvdqvv
    pllqqrgvfrteyegttlrehlglahpevgsir
    

    Sequence, based on observed residues (ATOM records): (download)
    >5xkcC (C:)
    rqlhlagffsagnvthahgawrhvgatngfltgefykqiartlergkfdllflpdglaie
    dsygdnletgvglggqgavaleptsviatmaavtqrlglgatvsttyyppyhvarvfatl
    dnlsdgriswnvvtslndsearnfgvdehlehdirydradefleavkklwsswsedalll
    dkvggrfadpkkvqyvnhrgrwlsvrgplqvprsrqgepvilqaglsprgrrfagrwaea
    vfsvspnldimravyqdikahvaaagrdpeqtkvftavmpvlgeteqvarerleylnslv
    hpevglstlsshsglnlskypldtkfsdivadlgdrhvptmlqmfsavagggadltlael
    grrygtnvgfvpqwagtaeqiadqlishfeagaadgfiispaylpgiyeefvdqvvpllq
    qrgvfrteyegttlrehlglahpevg
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >5xkcD (D:)
    maeqrqlhlagffsagnvthahgawrhvgatngfltgefykqiartlergkfdllflpdg
    laiedsygdnletgvglggqgavaleptsviatmaavtqrlglgatvsttyyppyhvarv
    fatldnlsdgriswnvvtslndsearnfgvdehlehdirydradefleavkklwsswsed
    allldkvggrfadpkkvqyvnhrgrwlsvrgplqvprsrqgepvilqaglsprgrrfagr
    waeavfsvspnldimravyqdikahvaaagrdpeqtkvftavmpvlgeteqvarerleyl
    nslvhpevglstlsshsglnlskypldtkfsdivadlgdrhvptmlqmfsavagggadlt
    laelgrrygtnvgfvpqwagtaeqiadqlishfeagaadgfiispaylpgiyeefvdqvv
    pllqqrgvfrteyegttlrehlglahpevgsir
    

    Sequence, based on observed residues (ATOM records): (download)
    >5xkcD (D:)
    rqlhlagffsagnvthahgawrhvgatngfltgefykqiartlergkfdllflpdglaie
    dsygdnletgvglggqgavaleptsviatmaavtqrlglgatvsttyyppyhvarvfatl
    dnlsdgriswnvvtslndsearnfgvdehlehdirydradefleavkklwsswsedalll
    dkvggrfadpkkvqyvnhrgrwlsvrgplqvprsrqgepvilqaglsprgrrfagrwaea
    vfsvspnldimravyqdikahvaaagrdpeqtkvftavmpvlgeteqvarerleylnslv
    hpevglstlsshsglnlskypldtkfsdivadlgdrhvptmlqmfsavagggadltlael
    grrygtnvgfvpqwagtaeqiadqlishfeagaadgfiispaylpgiyeefvdqvvpllq
    qrgvfrteyegttlrehlglahpevg