PDB entry 5xhg

View 5xhg on RCSB PDB site
Description: Crystal structure of Trastuzumab Fab fragment bearing Ne-(o-azidobenzyloxycarbonyl)-L-lysine
Class: immune system
Keywords: fab, immune system
Deposited on 2017-04-20, released 2017-12-20
The last revision prior to the SCOPe 2.06 freeze date was dated 2017-12-20, with a file datestamp of 2017-12-15.
Experiment type: XRAY
Resolution: 1.76 Å
R-factor: N/A
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: polypeptide(L)
    Species: Escherichia coli str. K-12 substr. W3110 [TaxId:316407]
    Database cross-references and differences (RAF-indexed):
    • PDB 5XHG (0-End)
    Domains in SCOPe 2.06: d5xhga1, d5xhga2
  • Chain 'B':
    Compound: polypeptide(H)
    Species: Escherichia coli str. K-12 substr. W3110 [TaxId:316407]
    Database cross-references and differences (RAF-indexed):
    • PDB 5XHG (0-219)
    Domains in SCOPe 2.06: d5xhgb1, d5xhgb2
  • Chain 'C':
    Compound: polypeptide(L)
    Species: Escherichia coli str. K-12 substr. W3110 [TaxId:316407]
    Database cross-references and differences (RAF-indexed):
    • PDB 5XHG (0-213)
    Domains in SCOPe 2.06: d5xhgc1, d5xhgc2
  • Chain 'D':
    Compound: polypeptide(H)
    Species: Escherichia coli str. K-12 substr. W3110 [TaxId:316407]
    Database cross-references and differences (RAF-indexed):
    • PDB 5XHG (0-219)
    Domains in SCOPe 2.06: d5xhgd1, d5xhgd2
  • Heterogens: OAZ, SO4, EDO, PEG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5xhgA (A:)
    diqmtqspsslsasvgdrvtitcrasqdvntavawyqqkpgkapklliysasflysgvps
    rfsgsrsgtdftltisslqpedfatyycqqhyttpptfgqgtkveikrtvaapsvfifpp
    sdeqlksgtasvvcllnnfypreakvqwkvdnalksgnsqesvteqdskdstyslsstlt
    lskadyekhkvyacevthqglsspvtksfnrgec
    

    Sequence, based on observed residues (ATOM records): (download)
    >5xhgA (A:)
    diqmtqspsslsasvgdrvtitcrasqdvntavawyqqkpgkapklliysasflysgvps
    rfsgsrsgtdftltisslqpedfatyycqqhyttpptfgqgtkveikrtvaapsvfifpp
    sdeqlksgtasvvcllnnfypreakvqwkvdnalksgnsqesvteqdskdstyslsstlt
    lskadyekhkvyacevthqglsspvtksfnrge
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5xhgB (B:)
    evqlvesggglvqpggslrlscaasgfnikdtyihwvrqapgkglewvariyptngytry
    adsvkgrftisadtskntaylqmnslraedtavyycsrwggdgfyamdywgqgtlvtvss
    astkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqss
    glyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvep
    

    Sequence, based on observed residues (ATOM records): (download)
    >5xhgB (B:)
    evqlvesggglvqpggslrlscaasgfnikdtyihwvrqapgkglewvariyptngytry
    adsvkgrftisadtskntaylqmnslraedtavyycsrwggdgfyamdywgqgtlvtvss
    astkgpsvfplapsgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglysls
    svvtvpssslgtqtyicnvnhkpsntkvdkkvep
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5xhgC (C:)
    diqmtqspsslsasvgdrvtitcrasqdvntavawyqqkpgkapklliysasflysgvps
    rfsgsrsgtdftltisslqpedfatyycqqhyttpptfgqgtkveikrtvaapsvfifpp
    sdeqlksgtasvvcllnnfypreakvqwkvdnalksgnsqesvteqdskdstyslsstlt
    lskadyekhkvyacevthqglsspvtksfnrgec
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5xhgD (D:)
    evqlvesggglvqpggslrlscaasgfnikdtyihwvrqapgkglewvariyptngytry
    adsvkgrftisadtskntaylqmnslraedtavyycsrwggdgfyamdywgqgtlvtvss
    astkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqss
    glyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvep