PDB entry 5xbp

View 5xbp on RCSB PDB site
Description: Oxygenase component of 3-nitrotoluene dioxygenase from Diaphorobacter sp. strain DS2
Class: metal binding protein
Keywords: Rieske non-heme oxygenase, iron-sulfur clusters, oxidoreductase, nitroaromatic compounds degrader, METAL BINDING PROTEIN
Deposited on 2017-03-21, released 2017-04-19
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-02-21, with a file datestamp of 2018-02-16.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 3NT oxygenase alpha subunit
    Species: Diaphorobacter sp. DS2 [TaxId:1302548]
    Gene: mntAc
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5xbpa1, d5xbpa2
  • Chain 'C':
    Compound: 3NT oxygenase beta subunit
    Species: Diaphorobacter sp. DS2 [TaxId:1302548]
    Gene: mntAd
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5xbpc_
  • Chain 'D':
    Compound: 3NT oxygenase alpha subunit
    Species: Diaphorobacter sp. DS2 [TaxId:1302548]
    Gene: mntAc
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5xbpd1, d5xbpd2
  • Chain 'F':
    Compound: 3NT oxygenase beta subunit
    Species: Diaphorobacter sp. DS2 [TaxId:1302548]
    Gene: mntAd
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5xbpf_
  • Chain 'G':
    Compound: 3NT oxygenase alpha subunit
    Species: Diaphorobacter sp. DS2 [TaxId:1302548]
    Gene: mntAc
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5xbpg1, d5xbpg2
  • Chain 'I':
    Compound: 3NT oxygenase beta subunit
    Species: Diaphorobacter sp. DS2 [TaxId:1302548]
    Gene: mntAd
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5xbpi_
  • Heterogens: FE, FES, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5xbpA (A:)
msyqnlvseagltqkhlihgdkelfqhemktifarnwlflthdslipspgdyvtakmgld
evivsrqndgsvraflnvcrhrgktivhaeagnakgfvcnyhgwgygtngelqsvpfeke
lygdaikkkclglkevpriesfhgfiygcfdaeapplidylgdaawymeptfkhsgglel
vgppgkvvvkanwktfaenfvgdiyhvgwthasilrvgqsvftplagnamlppegsglqm
tskygsgmslmwdyyagnhsadlvpdlmafggakqeklakeigdvrariyrshlngtifp
nnsfltgsaafkvwnpidenttevwtyafvekdmpedlkrrladavqrtvgpggywesdd
ndnmetlsqnakkyqssnsdliaslgfgkdvygdecypgvvgpsgasetsyrgfyrayqa
hisssnwaefenasrnwhteltkttd

    Sequence, based on observed residues (ATOM records): (download) 
    >5xbpA (A:)
syqnlvseagltqkhlihgdkelfqhemktifarnwlflthdslipspgdyvtakmglde
vivsrqndgsvraflnvcrhrgktivhaeagnakgfvcnyhgwgygtngelqsvpfekel
ygdaikkkclglkevpriesfhgfiygcfdaeapplidylgdaawymeptfkhsgglelv
gppgkvvvkanwktfaenfvgdiyhvgwthasilrvgqsvftplagnamlppegsglqmt
skygsgmslmwdyyagnhsadlvpdlmafggakqeklakeigdvrariyrshlngtifpn
nsfltgsaafkvwnpidenttevwtyafvekdmpedlkrrladavqrtvgpggywesddn
dnmetlsqnakkyqssnsdliaslgfgkdvygdecypgvvgpsgasetsyrgfyrayqah
isssnwaefenasrnwhteltktt

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5xbpC (C:)
mmintqedklvsahdaeefhrfyivqddallqevntlltreahlldiqaykawlehcvap
eikyqvisrelrstserryqlndavniynenyqqlkvrvehqmdpqnwpnspkirftrfv
tnvtaakdksapemlhvrsnlilhrarrgnevdvfyatredkwkriegggiqlverfvdy
perilphnllvfl

    Sequence, based on observed residues (ATOM records): (download) 
    >5xbpC (C:)
mintqedklvsahdaeefhrfyivqddallqevntlltreahlldiqaykawlehcvape
ikyqvisrelrstserryqlndavniynenyqqlkvrvehqmdpqnwpnspkirftrfvt
nvtaakdksapemlhvrsnlilhrarrgnevdvfyatredkwkriegggiqlverfvdyp
erilphnllvfl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5xbpD (D:)
msyqnlvseagltqkhlihgdkelfqhemktifarnwlflthdslipspgdyvtakmgld
evivsrqndgsvraflnvcrhrgktivhaeagnakgfvcnyhgwgygtngelqsvpfeke
lygdaikkkclglkevpriesfhgfiygcfdaeapplidylgdaawymeptfkhsgglel
vgppgkvvvkanwktfaenfvgdiyhvgwthasilrvgqsvftplagnamlppegsglqm
tskygsgmslmwdyyagnhsadlvpdlmafggakqeklakeigdvrariyrshlngtifp
nnsfltgsaafkvwnpidenttevwtyafvekdmpedlkrrladavqrtvgpggywesdd
ndnmetlsqnakkyqssnsdliaslgfgkdvygdecypgvvgpsgasetsyrgfyrayqa
hisssnwaefenasrnwhteltkttd

    Sequence, based on observed residues (ATOM records): (download) 
    >5xbpD (D:)
syqnlvseagltqkhlihgdkelfqhemktifarnwlflthdslipspgdyvtakmglde
vivsrqndgsvraflnvcrhrgktivhaeagnakgfvcnyhgwgygtngelqsvpfekel
ygdaikkkclglkevpriesfhgfiygcfdaeapplidylgdaawymeptfkhsgglelv
gppgkvvvkanwktfaenfvgdiyhvgwthasilrvgqsvftplagnamlppegsglqmt
skygsgmslmwdyyagnhsadlvpdlmafggakqeklakeigdvrariyrshlngtifpn
nsfltgsaafkvwnpidenttevwtyafvekdmpedlkrrladavqrtvgpggywesddn
dnmetlsqnakkyqssnsdliaslgfgkdvygdecypgvvgpsgasetsyrgfyrayqah
isssnwaefenasrnwhteltktt

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5xbpF (F:)
mmintqedklvsahdaeefhrfyivqddallqevntlltreahlldiqaykawlehcvap
eikyqvisrelrstserryqlndavniynenyqqlkvrvehqmdpqnwpnspkirftrfv
tnvtaakdksapemlhvrsnlilhrarrgnevdvfyatredkwkriegggiqlverfvdy
perilphnllvfl

    Sequence, based on observed residues (ATOM records): (download) 
    >5xbpF (F:)
mintqedklvsahdaeefhrfyivqddallqevntlltreahlldiqaykawlehcvape
ikyqvisrelrstserryqlndavniynenyqqlkvrvehqmdpqnwpnspkirftrfvt
nvtaakdksapemlhvrsnlilhrarrgnevdvfyatredkwkriegggiqlverfvdyp
erilphnllvfl

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >5xbpG (G:)
msyqnlvseagltqkhlihgdkelfqhemktifarnwlflthdslipspgdyvtakmgld
evivsrqndgsvraflnvcrhrgktivhaeagnakgfvcnyhgwgygtngelqsvpfeke
lygdaikkkclglkevpriesfhgfiygcfdaeapplidylgdaawymeptfkhsgglel
vgppgkvvvkanwktfaenfvgdiyhvgwthasilrvgqsvftplagnamlppegsglqm
tskygsgmslmwdyyagnhsadlvpdlmafggakqeklakeigdvrariyrshlngtifp
nnsfltgsaafkvwnpidenttevwtyafvekdmpedlkrrladavqrtvgpggywesdd
ndnmetlsqnakkyqssnsdliaslgfgkdvygdecypgvvgpsgasetsyrgfyrayqa
hisssnwaefenasrnwhteltkttd

    Sequence, based on observed residues (ATOM records): (download) 
    >5xbpG (G:)
syqnlvseagltqkhlihgdkelfqhemktifarnwlflthdslipspgdyvtakmglde
vivsrqndgsvraflnvcrhrgktivhaeagnakgfvcnyhgwgygtngelqsvpfekel
ygdaikkkclglkevpriesfhgfiygcfdaeapplidylgdaawymeptfkhsgglelv
gppgkvvvkanwktfaenfvgdiyhvgwthasilrvgqsvftplagnamlppegsglqmt
skygsgmslmwdyyagnhsadlvpdlmafggakqeklakeigdvrariyrshlngtifpn
nsfltgsaafkvwnpidenttevwtyafvekdmpedlkrrladavqrtvgpggywesddn
dnmetlsqnakkyqssnsdliaslgfgkdvygdecypgvvgpsgasetsyrgfyrayqah
isssnwaefenasrnwhteltktt

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >5xbpI (I:)
mmintqedklvsahdaeefhrfyivqddallqevntlltreahlldiqaykawlehcvap
eikyqvisrelrstserryqlndavniynenyqqlkvrvehqmdpqnwpnspkirftrfv
tnvtaakdksapemlhvrsnlilhrarrgnevdvfyatredkwkriegggiqlverfvdy
perilphnllvfl

    Sequence, based on observed residues (ATOM records): (download) 
    >5xbpI (I:)
mintqedklvsahdaeefhrfyivqddallqevntlltreahlldiqaykawlehcvape
ikyqvisrelrstserryqlndavniynenyqqlkvrvehqmdpqnwpnspkirftrfvt
nvtaakdksapemlhvrsnlilhrarrgnevdvfyatredkwkriegggiqlverfvdyp
erilphnllvfl