PDB entry 5x4l
View 5x4l on RCSB PDB site
Description: Crystal structure of the UBX domain of human UBXD7 in complex with p97 N domain
Class: hydrolase/protein binding
Keywords: UBXD7, p97, HYDROLASE-PROTEIN BINDING complex
Deposited on
2017-02-13, released
2017-03-22
The last revision prior to the SCOPe 2.08 freeze date was dated
2017-04-05, with a file datestamp of
2017-03-31.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.23
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Transitional endoplasmic reticulum ATPase
Species: Homo sapiens [TaxId:9606]
Gene: VCP
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5x4la1, d5x4la2, d5x4la3 - Chain 'B':
Compound: Transitional endoplasmic reticulum ATPase
Species: Homo sapiens [TaxId:9606]
Gene: VCP
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5x4lb1, d5x4lb2 - Chain 'C':
Compound: UBX domain-containing protein 7
Species: Homo sapiens [TaxId:9606]
Gene: UBXN7, KIAA0794, UBXD7
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5x4lc_ - Chain 'D':
Compound: UBX domain-containing protein 7
Species: Homo sapiens [TaxId:9606]
Gene: UBXN7, KIAA0794, UBXD7
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5x4ld_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5x4lA (A:)
ggspnrlivdeainednsvvslsqpkmdelqlfrgdtvllkgkkrreavcivlsddtcsd
ekirmnrvvrnnlrvrlgdvisiqpcpdvkygkrihvlpiddtvegitgnlfevylkpyf
leayrpirkgdiflvrggmravefkvvetdpspycivapdtvihcegepikredeee
Sequence, based on observed residues (ATOM records): (download)
>5x4lA (A:)
spnrlivdeainednsvvslsqpkmdelqlfrgdtvllkgkkrreavcivlsddtcsdek
irmnrvvrnnlrvrlgdvisiqpcpdvkygkrihvlpiddtvegitgnlfevylkpyfle
ayrpirkgdiflvrggmravefkvvetdpspycivapdtvihcegepikr
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5x4lB (B:)
ggspnrlivdeainednsvvslsqpkmdelqlfrgdtvllkgkkrreavcivlsddtcsd
ekirmnrvvrnnlrvrlgdvisiqpcpdvkygkrihvlpiddtvegitgnlfevylkpyf
leayrpirkgdiflvrggmravefkvvetdpspycivapdtvihcegepikredeee
Sequence, based on observed residues (ATOM records): (download)
>5x4lB (B:)
nrlivdeainednsvvslsqpkmdelqlfrgdtvllkgkkrreavcivlsddtcsdekir
mnrvvrnnlrvrlgdvisiqpcpdvkygkrihvlpiddtvegitgnlfevylkpyfleay
rpirkgdiflvrggmravefkvvetdpspycivapdtvihcegepikr
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5x4lC (C:)
ggsgpkaqlmlrypdgkreqitlpeqakllalvkhvqskgypnerfelltnfprrklshl
dyditmqeaglcpqetvfvqern
Sequence, based on observed residues (ATOM records): (download)
>5x4lC (C:)
pkaqlmlrypdgkreqitlpeqakllalvkhvqskgypnerfelltnfprrklshldydi
tmqeaglcpqetvfvqern
- Chain 'D':
Sequence, based on SEQRES records: (download)
>5x4lD (D:)
ggsgpkaqlmlrypdgkreqitlpeqakllalvkhvqskgypnerfelltnfprrklshl
dyditmqeaglcpqetvfvqern
Sequence, based on observed residues (ATOM records): (download)
>5x4lD (D:)
pkaqlmlrypdgkreqitlpeqakllalvkhvqskgypnerfelltnfprrklshldydi
tmqeaglcpqetvfvqern