PDB entry 5wyr

View 5wyr on RCSB PDB site
Description: Crystal structure and catalytic mechanism of the essential m1G37 tRNA methyltransferase TrmD from Pseudomonas aeruginosa
Class: transferase
Keywords: tRNA (guanine-N(1)-)-methyltransferase, TrmD, Pseudomonas aerugiona, TRANSFERASE
Deposited on 2017-01-15, released 2017-12-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-10-02, with a file datestamp of 2019-09-27.
Experiment type: XRAY
Resolution: 2.45 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: tRNA (guanine-N(1)-)-methyltransferase
    Species: Pseudomonas aeruginosa (strain UCBPP-PA14) [TaxId:208963]
    Gene: trmD, PA14_15990
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q02RL6 (2-247)
      • expression tag (0-1)
    Domains in SCOPe 2.08: d5wyra1, d5wyra2
  • Chain 'B':
    Compound: tRNA (guanine-N(1)-)-methyltransferase
    Species: Pseudomonas aeruginosa (strain UCBPP-PA14) [TaxId:208963]
    Gene: trmD, PA14_15990
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q02RL6 (2-247)
      • expression tag (0-1)
    Domains in SCOPe 2.08: d5wyrb1, d5wyrb2
  • Heterogens: SFG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5wyrA (A:)
smlwvgvvsifpemfraisdygitsravkqglltltcwnprvytedrhqtvddrpfgggp
gmvmkikplegaladarqaaggrkakviylspqgrqltqagvrelaeeealiliagryeg
iderfieehvdeewsigdyvlsggelpamvlvdavtrllpgalghadsaeedsftdglld
cphytrpevyadkrvpevllsgnhehirrwrlqqalgrtwerradlldsrslsgeeqkll
aeyirqrd

    Sequence, based on observed residues (ATOM records): (download) 
    >5wyrA (A:)
smlwvgvvsifpemfraisdygitsravkqglltltcwnprvytedrhqtvddrpfgggp
gmvmkikplegaladarqaaggrkakviylspqgrqltqagvrelaeeealiliagryeg
iderfieehvdeewsigdyvlsggelpamvlvdavtrllpgalgedsftdglldcphytr
pevyadkrvpevllsgnhehirrwrlqqalgrtwerradlldsrslsgeeqkllaeyirq
rd

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5wyrB (B:)
smlwvgvvsifpemfraisdygitsravkqglltltcwnprvytedrhqtvddrpfgggp
gmvmkikplegaladarqaaggrkakviylspqgrqltqagvrelaeeealiliagryeg
iderfieehvdeewsigdyvlsggelpamvlvdavtrllpgalghadsaeedsftdglld
cphytrpevyadkrvpevllsgnhehirrwrlqqalgrtwerradlldsrslsgeeqkll
aeyirqrd