PDB entry 5wio
View 5wio on RCSB PDB site
Description: TraE protein in complex with 4-(1H-pyrrol-1-yl)pyridine-2-carboxylic acid
Class: protein transport
Keywords: Type IV Secretion System, Fragment-Based Drug Design, Complex, Inhibitor, Antimicrobial Resistance, Bacterial secretion, VirB, PROTEIN TRANSPORT
Deposited on
2017-07-19, released
2017-11-15
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-01-08, with a file datestamp of
2020-01-03.
Experiment type: XRAY
Resolution: 2.52 Å
R-factor: N/A
AEROSPACI score: 0.2
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Conjugal transfer protein
Species: Escherichia coli [TaxId:562]
Gene: traE, B634_00049, BE957_00530, ECONIH1_27615, pec386IL_00125, pEcNDM0_00049, pHKU1_33, pKC394-028, pKC396-021, pMUR050_041, pN3_023
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5wioa_ - Chain 'B':
Compound: Conjugal transfer protein
Species: Escherichia coli [TaxId:562]
Gene: traE, B634_00049, BE957_00530, ECONIH1_27615, pec386IL_00125, pEcNDM0_00049, pHKU1_33, pKC394-028, pKC396-021, pMUR050_041, pN3_023
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5wiob_ - Chain 'C':
Compound: Conjugal transfer protein
Species: Escherichia coli [TaxId:562]
Gene: traE, B634_00049, BE957_00530, ECONIH1_27615, pec386IL_00125, pEcNDM0_00049, pHKU1_33, pKC394-028, pKC396-021, pMUR050_041, pN3_023
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5wioc_ - Chain 'D':
Compound: Conjugal transfer protein
Species: Escherichia coli [TaxId:562]
Gene: traE, B634_00049, BE957_00530, ECONIH1_27615, pec386IL_00125, pEcNDM0_00049, pHKU1_33, pKC394-028, pKC396-021, pMUR050_041, pN3_023
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5wiod_ - Heterogens: XXE, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5wioA (A:)
ahlltlneathevqqvkltrdqtsygdeidkfwltqyvihresydfysvqvdytavglms
tpnvaesyqskfkgrngldkvlgdsettrvkinsvildkphgvatirfttvrrvrsnpvd
dqpqrwiaimgyeykslamnaeqryvnplgfrvtsyrvnpevn
Sequence, based on observed residues (ATOM records): (download)
>5wioA (A:)
trdqtsygdeidkfwltqyvihresydfysvqvdytavglmstpnvaesyqskfkgrngl
dkvlgdsettrvkinsvildkphgvatirfttvrrvrsnpvddqpqrwiaimgyeyksla
mnaeqryvnplgfrvtsyrvnpe
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5wioB (B:)
ahlltlneathevqqvkltrdqtsygdeidkfwltqyvihresydfysvqvdytavglms
tpnvaesyqskfkgrngldkvlgdsettrvkinsvildkphgvatirfttvrrvrsnpvd
dqpqrwiaimgyeykslamnaeqryvnplgfrvtsyrvnpevn
Sequence, based on observed residues (ATOM records): (download)
>5wioB (B:)
rdqtsygdeidkfwltqyvihresydfysvqvdytavglmstpnvaesyqskfkgrngld
kvlgdsettrvkinsvildkphgvatirfttvrrvrsnpvddqpqrwiaimgyeykslam
naeqryvnplgfrvtsyrvnpe
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5wioC (C:)
ahlltlneathevqqvkltrdqtsygdeidkfwltqyvihresydfysvqvdytavglms
tpnvaesyqskfkgrngldkvlgdsettrvkinsvildkphgvatirfttvrrvrsnpvd
dqpqrwiaimgyeykslamnaeqryvnplgfrvtsyrvnpevn
Sequence, based on observed residues (ATOM records): (download)
>5wioC (C:)
tsygdeidkfwltqyvihresydfysvqvdytavglmstpnvaesyqskfkgrngldkvl
gdsettrvkinsvildkphgvatirfttvrrvrsnpvddqpqrwiaimgyeykslamnae
qryvnplgfrvtsyrvnpe
- Chain 'D':
Sequence, based on SEQRES records: (download)
>5wioD (D:)
ahlltlneathevqqvkltrdqtsygdeidkfwltqyvihresydfysvqvdytavglms
tpnvaesyqskfkgrngldkvlgdsettrvkinsvildkphgvatirfttvrrvrsnpvd
dqpqrwiaimgyeykslamnaeqryvnplgfrvtsyrvnpevn
Sequence, based on observed residues (ATOM records): (download)
>5wioD (D:)
ygdeidkfwltqyvihresydfysvqvdytavglmstpnvaesyqskfkgrngldsettr
vkinsvildkphgvatirfttvrrvrsnpvddqpqrwiaimgyeykslamnaeqryvnpl
gfrvtsyrvnpevn