PDB entry 5w3l

View 5w3l on RCSB PDB site
Description: CryoEM structure of rhinovirus B14 in complex with C5 Fab (4 degrees Celsius, molar ratio 1:3, full particle)
Class: virus/immune system
Keywords: virus, antibody, VIRUS-IMMUNE SYSTEM complex
Deposited on 2017-06-08, released 2017-07-12
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-08-09, with a file datestamp of 2017-08-04.
Experiment type: EM
Resolution: 2.71 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: viral protein 1
    Species: Human rhinovirus 14 [TaxId:12131]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5w3la_
  • Chain 'B':
    Compound: viral protein 3
    Species: Human rhinovirus 14 [TaxId:12131]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5w3lb_
  • Chain 'C':
    Compound: viral protein 2
    Species: Human rhinovirus 14 [TaxId:12131]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: viral protein 4
    Species: Human rhinovirus 14 [TaxId:12131]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: C5 antibody variable heavy domain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5W3L (0-115)
    Domains in SCOPe 2.07: d5w3le_
  • Chain 'G':
    Compound: C5 antibody variable light domain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5W3L (0-106)
    Domains in SCOPe 2.07: d5w3lg_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5w3lA (A:)
glgdeleevivektkqtvasissgpkhtqkvpiltanetgatmpvlpsdsietrttymhf
ngsetdvecflgraacvhvteiqnkdatgidnhreaklfndwkinlsslvqlrkklelft
yvrfdseytilatasqpdsanyssnlvvqamyvppgapnpkewddytwqsasnpsvffkv
gdtsrfsvpyvglasayncfydgyshddaetqygitvlnhmgsmafrivnehdehktlvk
irvyhrakhveawiprapralpytsigrtnypkntepvikkrkgdiksy

    Sequence, based on observed residues (ATOM records): (download) 
    >5w3lA (A:)
qtvasissgpkhtqkvpiltanetgatmpvlpsdsietrttymhfngsetdvecflgraa
cvhvteiqnkdatgidnhreaklfndwkinlsslvqlrkklelftyvrfdseytilatas
qpdsanyssnlvvqamyvppgapnpkewddytwqsasnpsvffkvgdtsrfsvpyvglas
ayncfydgyshddaetqygitvlnhmgsmafrivnehdehktlvkirvyhrakhveawip
rapralpytsigrtnypkntepvikkrkgdiksy

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5w3lB (B:)
glptttlpgsgqflttddrqspsalpnyeptprihipgkvhnlleiiqvdtlipmnntht
kdevnsyliplnanrqneqvfgtnlfigdgvfkttllgeivqyythwsgslrfslmytgp
alssaklilaytppgargpqdrreamlgthvvwdiglqstivmtipwtsgvqfrytdpdt
ytsagflscwyqtslilppettgqvyllsfisacpdfklrlmkdtqtisqtvalte

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5w3lE (E:)
avqlaesgpalvapsqalsitctvagfsltaygvawvrqppgaglewlgaiwaagatdyn
aalksrasiakdnsksqvflamaslatadtaayycarewdaygdywgqgttvtvsa

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5w3lG (G:)
divltqspaalsaaagatvaatcrasgnihnalawyqqkagkspqllvyaaaalaagvps
rfsgsgsgtayalainslaaddfgayycqhfwstpytfgggtkleik