PDB entry 5vxk

View 5vxk on RCSB PDB site
Description: 2.55 A resolution structure of IpaD from Shigella flexneri in complex with single-domain antibody JMK-H2
Class: immune system
Keywords: tip protein, VHH, T3SS, IMMUNE SYSTEM
Deposited on 2017-05-23, released 2017-08-30
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-08-30, with a file datestamp of 2017-08-25.
Experiment type: XRAY
Resolution: 2.55 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: invasin ipad
    Species: Shigella flexneri [TaxId:623]
    Gene: ipaD, CP0126
    Database cross-references and differences (RAF-indexed):
    • Uniprot P18013 (Start-288)
      • engineered mutation (288)
    Domains in SCOPe 2.08: d5vxka_
  • Chain 'B':
    Compound: single-domain antibody JMK-H2
    Species: Vicugna pacos [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 5VXK
    Domains in SCOPe 2.08: d5vxkb_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5vxkA (A:)
gstgshpvssltmlndtlhnirttnqalkkelsqktltktsleeialhssqismdvnksa
qlldilsrneypinkdarellhsapkeaeldgdqmishrelwakiansindineqylkvy
ehavssytqmyqdfsavlsslagwispggndgnsvklqvnslkkaleelkekykdkplyp
anntvsqeqankwltelggtigkvsqknggyvvsinmtpidnmlksldnlggngevvldn
akyqawnagfsaedetmknnlqtlvqkysnansifdnlvkvlsstisss

    Sequence, based on observed residues (ATOM records): (download) 
    >5vxkA (A:)
vssltmlndtlhnirttnqalkkelsqktltktsleeialhssqismdvnksaqlldils
rneypinkdarellhsapkeaeldgdqmishrelwakiansindineqylkvyehavssy
tqmyqdfsavlsslagwispggndgnsvklqvnslkkaleelkekykdkplypanntvsq
eqankwltelggtigkvsqknggyvvsinmtpidnmlksldnlggngevvldnakyqawn
agfsaedetmknnlqtlvqkysnansifdnlvkvlsstisss

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5vxkB (B:)
gstqlqlvesggglvqpggslrlscaasgftlddqpiawfrqapgkeregvscisidgnt
qsysdsvkgrftisrdtannrvhlqmnnlkpedtavyycaadrytsvrqmctmieglhrv
wgqgtqvtvssepktpkpqprqgapvpypdplepr

    Sequence, based on observed residues (ATOM records): (download) 
    >5vxkB (B:)
lqlvesggglvqpggslrlscaasgftlddqpiawfrqapgkeregvscisidgntqsys
dsvkgrftisrdtannrvhlqmnnlkpedtavyycaadrytsvrqmctmieglhrvwgqg
tqvtv