PDB entry 5vrb

View 5vrb on RCSB PDB site
Description: Crystal structure of a transketolase from Neisseria gonorrhoeae
Class: transferase
Keywords: transketolase, TPP, thiamine, thiamine pyrophosphate, calcium-dependent, NIAID, structural genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID, TRANSFERASE
Deposited on 2017-05-10, released 2017-05-17
The last revision prior to the SCOPe 2.06 freeze date was dated 2017-05-17, with a file datestamp of 2017-05-12.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: N/A
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: transketolase
    Species: Neisseria gonorrhoeae (strain NCCP11945) [TaxId:521006]
    Gene: NGK_0759
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5vrba1, d5vrba2, d5vrba3
  • Chain 'B':
    Compound: transketolase
    Species: Neisseria gonorrhoeae (strain NCCP11945) [TaxId:521006]
    Gene: NGK_0759
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5vrbb1, d5vrbb2, d5vrbb3
  • Chain 'C':
    Compound: transketolase
    Species: Neisseria gonorrhoeae (strain NCCP11945) [TaxId:521006]
    Gene: NGK_0759
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5vrbc1, d5vrbc2, d5vrbc3
  • Chain 'D':
    Compound: transketolase
    Species: Neisseria gonorrhoeae (strain NCCP11945) [TaxId:521006]
    Gene: NGK_0759
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5vrbd1, d5vrbd2, d5vrbd3
  • Heterogens: EDO, CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5vrbA (A:)
mahhhhhhmsqlanvirflsadavqkansghpgapmgmaemaetlwtkflnhnpanpkfy
nrdrfvlsnghasmllysllhltgynlsiedlknfrqlhsktpghpeygytdgvetttgp
lgqgianavgmalaekilaaefnkdglnivdhytyvfmgdgclmegvsheacslagtlgl
gklivlyddnnisidgkvdgwftenipqrfesygwhvvpnvnghdtaaiqtaieaaraet
gkpsiiccktligkgsankegshkthgaplgadeieatrkhlgwaypafeipqeiydawn
akekgakleagwnelfaqyqakypaeaaefvrrmdkklpenfdeyvqtalkevcakaetv
atrkasqnsieilakelpelvggsadltpsnltdwsnsvsvtrdkggnyihygvrefgmg
aimnglvlhggvkpfgatflmfseyernalrmaalmkinpvfvfthdsiglgedgpthqp
ieqtatlrlipnmdvwrpcdtaeslvawaeaakaedhpsclifsrqnlkfqarseqqlnd
ikrgayviseaqgnaqaviiatgsevglaveaqkvlagqgiavrvvsmpstsvfdrqdaa
yqaavlpeglpriaveaghtngwykyvglngavvginrfgesapadllfkafgftvdnvv
dtvksvl

    Sequence, based on observed residues (ATOM records): (download) 
    >5vrbA (A:)
sqlanvirflsadavqkansghpgapmgmaemaetlwtkflnhnpanpkfynrdrfvlsn
ghasmllysllhltgynlsiedlknfrqlhsktpghpeygytdgvetttgplgqgianav
gmalaekilaaefnkdglnivdhytyvfmgdgclmegvsheacslagtlglgklivlydd
nnigwftenipqrfesygwhvvpnvnghdtaaiqtaieaaraetgkpsiiccktleatrk
hlgwaypafeipqeiydawnakekgakleagwnelfaqyqakypaeaaefvrrmdkklpe
nfdeyvqtalkevcakaetvatrkasqnsieilakelpelvggsadltpsnltdwsnsvs
vtrdkggnyihygvrefgmgaimnglvlhggvkpfgatflmfseyernalrmaalmkinp
vfvfthdsiglgedgpthqpieqtatlrlipnmdvwrpcdtaeslvawaeaakaedhpsc
lifsrqnlkfqarseqqlndikrgayviseaqgnaqaviiatgsevglaveaqkvlagqg
iavrvvsmpstsvfdrqdaayqaavlpeglpriaveaghtngwykyvglngavvginrfg
esapadllfkafgftvdnvvdtvksvl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5vrbB (B:)
mahhhhhhmsqlanvirflsadavqkansghpgapmgmaemaetlwtkflnhnpanpkfy
nrdrfvlsnghasmllysllhltgynlsiedlknfrqlhsktpghpeygytdgvetttgp
lgqgianavgmalaekilaaefnkdglnivdhytyvfmgdgclmegvsheacslagtlgl
gklivlyddnnisidgkvdgwftenipqrfesygwhvvpnvnghdtaaiqtaieaaraet
gkpsiiccktligkgsankegshkthgaplgadeieatrkhlgwaypafeipqeiydawn
akekgakleagwnelfaqyqakypaeaaefvrrmdkklpenfdeyvqtalkevcakaetv
atrkasqnsieilakelpelvggsadltpsnltdwsnsvsvtrdkggnyihygvrefgmg
aimnglvlhggvkpfgatflmfseyernalrmaalmkinpvfvfthdsiglgedgpthqp
ieqtatlrlipnmdvwrpcdtaeslvawaeaakaedhpsclifsrqnlkfqarseqqlnd
ikrgayviseaqgnaqaviiatgsevglaveaqkvlagqgiavrvvsmpstsvfdrqdaa
yqaavlpeglpriaveaghtngwykyvglngavvginrfgesapadllfkafgftvdnvv
dtvksvl

    Sequence, based on observed residues (ATOM records): (download) 
    >5vrbB (B:)
sqlanvirflsadavqkansghpgapmgmaemaetlwtkflnhnpanpkfynrdrfvlsn
ghasmllysllhltgynlsiedlknfrqlhsktpghpeygytdgvetttgplgqgianav
gmalaekilaaefnkdglnivdhytyvfmgdgclmegvsheacslagtlglgklivlydd
nnisidgkvdgwftenipqrfesygwhvvpnvnghdtaaiqtaieaaraetgkpsiicck
tligkgsankegshkthgaplgadeieatrkhlgwaypafeipqeiydawnakekgakle
agwnelfaqyqakypaeaaefvrrmdkklpenfdeyvqtalkevcakqnsieilakelpe
lvggsadltpsnltdwsnsvsvtrdkggnyihygvrefgmgaimnglvlhggvkpfgatf
lmfseyernalrmaalmkinpvfvfthdsiglgedgpthqpieqtatlrlipnmdvwrpc
dtaeslvawaeaakaedhpsclifsrqnfqarseqqlndikrgayviseaqgnaqaviia
tgsevglaveaqkvlagqgiavrvvsmpstsvfdrqdaayqaavlpeglpriaveaghtn
gwykyvglngavvginrfgesapadllfkafgftvdnvvdtvksvl

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5vrbC (C:)
mahhhhhhmsqlanvirflsadavqkansghpgapmgmaemaetlwtkflnhnpanpkfy
nrdrfvlsnghasmllysllhltgynlsiedlknfrqlhsktpghpeygytdgvetttgp
lgqgianavgmalaekilaaefnkdglnivdhytyvfmgdgclmegvsheacslagtlgl
gklivlyddnnisidgkvdgwftenipqrfesygwhvvpnvnghdtaaiqtaieaaraet
gkpsiiccktligkgsankegshkthgaplgadeieatrkhlgwaypafeipqeiydawn
akekgakleagwnelfaqyqakypaeaaefvrrmdkklpenfdeyvqtalkevcakaetv
atrkasqnsieilakelpelvggsadltpsnltdwsnsvsvtrdkggnyihygvrefgmg
aimnglvlhggvkpfgatflmfseyernalrmaalmkinpvfvfthdsiglgedgpthqp
ieqtatlrlipnmdvwrpcdtaeslvawaeaakaedhpsclifsrqnlkfqarseqqlnd
ikrgayviseaqgnaqaviiatgsevglaveaqkvlagqgiavrvvsmpstsvfdrqdaa
yqaavlpeglpriaveaghtngwykyvglngavvginrfgesapadllfkafgftvdnvv
dtvksvl

    Sequence, based on observed residues (ATOM records): (download) 
    >5vrbC (C:)
sqlanvirflsadavqkansghpgapmgmaemaetlwtkflnhnpanpkfynrdrfvlsn
ghasmllysllhltgynlsiedlknfrqlhsktpghpeygytdgvetttgplgqgianav
gmalaekilaaefnkdglnivdhytyvfmgdgclmegvsheacslagtlglgklivlydd
nndgwftenipqrfesygwhvvpnvnghdtaaiqtaieaaraetgkpsiiccktlaplie
atrkhlgwaypafeipqeiydawnakekgakleagwnelfaqyqakypaeaaefvrrmdk
klpenfdeyvqtalkevcaknsieilakelpelvggsadltpsnltdwsnsvsvtrdkgg
nyihygvrefgmgaimnglvlhggvkpfgatflmfseyernalrmaalmkinpvfvfthd
siglgedgpthqpieqtatlrlipnmdvwrpcdtaeslvawaeaakaedhpsclifsrqa
rseqqlndikrgayviseaqgnaqaviiatgsevglaveaqkvlagqgiavrvvsmpsts
vfdrqdaayqaavlpeglpriaveaghtngwykyvglngavvginrfgesapadllfkaf
gftvdnvvdtvksvl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5vrbD (D:)
mahhhhhhmsqlanvirflsadavqkansghpgapmgmaemaetlwtkflnhnpanpkfy
nrdrfvlsnghasmllysllhltgynlsiedlknfrqlhsktpghpeygytdgvetttgp
lgqgianavgmalaekilaaefnkdglnivdhytyvfmgdgclmegvsheacslagtlgl
gklivlyddnnisidgkvdgwftenipqrfesygwhvvpnvnghdtaaiqtaieaaraet
gkpsiiccktligkgsankegshkthgaplgadeieatrkhlgwaypafeipqeiydawn
akekgakleagwnelfaqyqakypaeaaefvrrmdkklpenfdeyvqtalkevcakaetv
atrkasqnsieilakelpelvggsadltpsnltdwsnsvsvtrdkggnyihygvrefgmg
aimnglvlhggvkpfgatflmfseyernalrmaalmkinpvfvfthdsiglgedgpthqp
ieqtatlrlipnmdvwrpcdtaeslvawaeaakaedhpsclifsrqnlkfqarseqqlnd
ikrgayviseaqgnaqaviiatgsevglaveaqkvlagqgiavrvvsmpstsvfdrqdaa
yqaavlpeglpriaveaghtngwykyvglngavvginrfgesapadllfkafgftvdnvv
dtvksvl

    Sequence, based on observed residues (ATOM records): (download) 
    >5vrbD (D:)
msqlanvirflsadavqkansghpgapmgmaemaetlwtkflnhnpanpkfynrdrfvls
nghasmllysllhltgynlsiedlknfrqlhsktpghpeygytdgvetttgplgqgiana
vgmalaekilaaefnkdglnivdhytyvfmgdgclmegvsheacslagtlglgklivlyd
dndgwftenipqrfesygwhvvpnvnghdtaaiqtaieaaraetgkpsiiccktligkgs
ankegshkthgaplgadeieatrkhlgwaypafeipqeiydawnakekgakleagwnelf
aqyqakypaeaaefvrrmdkklpenfdeyvqtalkevcaknsieilakelpelvggsadl
tpsnltdwsnsvsvtrdkggnyihygvrefgmgaimnglvlhggvkpfgatflmfseyer
nalrmaalmkinpvfvfthdsiglgedgpthqpieqtatlrlipnmdvwrpcdtaeslva
waeaakaedhpsclifsrqnlkfqarseqqlndikrgayviseaqgnaqaviiatgsevg
laveaqkvlagqgiavrvvsmpstsvfdrqdaayqaavlpeglpriaveaghtngwykyv
glngavvginrfgesapadllfkafgftvdnvvdtvksvl