PDB entry 5vjy

View 5vjy on RCSB PDB site
Description: Crystal Structure of dUTP pyrophosphatase protein, from Naegleria fowleri
Class: hydrolase
Keywords: Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID, dUTP pyrophosphatase, HYDROLASE
Deposited on 2017-04-20, released 2017-05-03
The last revision prior to the SCOPe 2.06 freeze date was dated 2017-05-03, with a file datestamp of 2017-04-28.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: dUTP pyrophosphatase
    Species: Naegleria fowleri [TaxId:5763]
    Database cross-references and differences (RAF-indexed):
    • PDB 5VJY
    Domains in SCOPe 2.06: d5vjya1, d5vjya2
  • Chain 'B':
    Compound: dUTP pyrophosphatase
    Species: Naegleria fowleri [TaxId:5763]
    Database cross-references and differences (RAF-indexed):
    • PDB 5VJY
    Domains in SCOPe 2.06: d5vjyb1, d5vjyb2
  • Chain 'C':
    Compound: dUTP pyrophosphatase
    Species: Naegleria fowleri [TaxId:5763]
    Database cross-references and differences (RAF-indexed):
    • PDB 5VJY
    Domains in SCOPe 2.06: d5vjyc1, d5vjyc2
  • Chain 'D':
    Compound: dUTP pyrophosphatase
    Species: Naegleria fowleri [TaxId:5763]
    Database cross-references and differences (RAF-indexed):
    • PDB 5VJY
    Domains in SCOPe 2.06: d5vjyd1, d5vjyd2
  • Chain 'E':
    Compound: dUTP pyrophosphatase
    Species: Naegleria fowleri [TaxId:5763]
    Database cross-references and differences (RAF-indexed):
    • PDB 5VJY
    Domains in SCOPe 2.06: d5vjye1, d5vjye2
  • Heterogens: BTB, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5vjyA (A:)
    mahhhhhhmstpqlmrvkklsefailpvrssqfaagfdlasaydyvvpargkclvktdla
    vavphgyygrvaprsglavknfidvgagvvdsdyrgnlgvllfnhgdedfkiargdriaq
    fvieqialpdivevddldetergaggfgstgvksk
    

    Sequence, based on observed residues (ATOM records): (download)
    >5vjyA (A:)
    hmstpqlmrvkklsefailpvrssqfaagfdlasaydyvvpargkclvktdlavavphgy
    ygrvaprsglavknfidvgagvvdsdyrgnlgvllfnhgdedfkiargdriaqfvieqia
    lpdivevddld
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5vjyB (B:)
    mahhhhhhmstpqlmrvkklsefailpvrssqfaagfdlasaydyvvpargkclvktdla
    vavphgyygrvaprsglavknfidvgagvvdsdyrgnlgvllfnhgdedfkiargdriaq
    fvieqialpdivevddldetergaggfgstgvksk
    

    Sequence, based on observed residues (ATOM records): (download)
    >5vjyB (B:)
    hmstpqlmrvkklsefailpvrssqfaagfdlasaydyvvpargkclvktdlavavphgy
    ygrvaprsglavknfidvgagvvdsdyrgnlgvllfnhgdedfkiargdriaqfvieqia
    lpdivevddlde
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >5vjyC (C:)
    mahhhhhhmstpqlmrvkklsefailpvrssqfaagfdlasaydyvvpargkclvktdla
    vavphgyygrvaprsglavknfidvgagvvdsdyrgnlgvllfnhgdedfkiargdriaq
    fvieqialpdivevddldetergaggfgstgvksk
    

    Sequence, based on observed residues (ATOM records): (download)
    >5vjyC (C:)
    hmstpqlmrvkklsefailpvrssqfaagfdlasaydyvvpargkclvktdlavavphgy
    ygrvaprsglavknfidvgagvvdsdyrgnlgvllfnhgdedfkiargdriaqfvieqia
    lpdivevddlde
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >5vjyD (D:)
    mahhhhhhmstpqlmrvkklsefailpvrssqfaagfdlasaydyvvpargkclvktdla
    vavphgyygrvaprsglavknfidvgagvvdsdyrgnlgvllfnhgdedfkiargdriaq
    fvieqialpdivevddldetergaggfgstgvksk
    

    Sequence, based on observed residues (ATOM records): (download)
    >5vjyD (D:)
    hmstpqlmrvkklsefailpvrssqfaagfdlasaydyvvpargkclvktdlavavphgy
    ygrvaprsglavknfidvgagvvdsdyrgnlgvllfnhgdedfkiargdriaqfvieqia
    lpdivevddld
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >5vjyE (E:)
    mahhhhhhmstpqlmrvkklsefailpvrssqfaagfdlasaydyvvpargkclvktdla
    vavphgyygrvaprsglavknfidvgagvvdsdyrgnlgvllfnhgdedfkiargdriaq
    fvieqialpdivevddldetergaggfgstgvksk
    

    Sequence, based on observed residues (ATOM records): (download)
    >5vjyE (E:)
    hmstpqlmrvkklsefailpvrssqfaagfdlasaydyvvpargkclvktdlavavphgy
    ygrvaprsglavknfidvgagvvdsdyrgnlgvllfnhgdedfkiargdriaqfvieqia
    lpdivevddlde