PDB entry 5vjy
View 5vjy on RCSB PDB site
Description: Crystal Structure of dUTP pyrophosphatase protein, from Naegleria fowleri
Class: hydrolase
Keywords: Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID, dUTP pyrophosphatase, HYDROLASE
Deposited on
2017-04-20, released
2017-05-03
The last revision prior to the SCOPe 2.06 freeze date was dated
2017-05-03, with a file datestamp of
2017-04-28.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.32
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: dUTP pyrophosphatase
Species: Naegleria fowleri [TaxId:5763]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5vjya1, d5vjya2 - Chain 'B':
Compound: dUTP pyrophosphatase
Species: Naegleria fowleri [TaxId:5763]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5vjyb1, d5vjyb2 - Chain 'C':
Compound: dUTP pyrophosphatase
Species: Naegleria fowleri [TaxId:5763]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5vjyc1, d5vjyc2 - Chain 'D':
Compound: dUTP pyrophosphatase
Species: Naegleria fowleri [TaxId:5763]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5vjyd1, d5vjyd2 - Chain 'E':
Compound: dUTP pyrophosphatase
Species: Naegleria fowleri [TaxId:5763]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5vjye1, d5vjye2 - Heterogens: BTB, EDO, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5vjyA (A:)
mahhhhhhmstpqlmrvkklsefailpvrssqfaagfdlasaydyvvpargkclvktdla
vavphgyygrvaprsglavknfidvgagvvdsdyrgnlgvllfnhgdedfkiargdriaq
fvieqialpdivevddldetergaggfgstgvksk
Sequence, based on observed residues (ATOM records): (download)
>5vjyA (A:)
hmstpqlmrvkklsefailpvrssqfaagfdlasaydyvvpargkclvktdlavavphgy
ygrvaprsglavknfidvgagvvdsdyrgnlgvllfnhgdedfkiargdriaqfvieqia
lpdivevddld
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5vjyB (B:)
mahhhhhhmstpqlmrvkklsefailpvrssqfaagfdlasaydyvvpargkclvktdla
vavphgyygrvaprsglavknfidvgagvvdsdyrgnlgvllfnhgdedfkiargdriaq
fvieqialpdivevddldetergaggfgstgvksk
Sequence, based on observed residues (ATOM records): (download)
>5vjyB (B:)
hmstpqlmrvkklsefailpvrssqfaagfdlasaydyvvpargkclvktdlavavphgy
ygrvaprsglavknfidvgagvvdsdyrgnlgvllfnhgdedfkiargdriaqfvieqia
lpdivevddlde
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5vjyC (C:)
mahhhhhhmstpqlmrvkklsefailpvrssqfaagfdlasaydyvvpargkclvktdla
vavphgyygrvaprsglavknfidvgagvvdsdyrgnlgvllfnhgdedfkiargdriaq
fvieqialpdivevddldetergaggfgstgvksk
Sequence, based on observed residues (ATOM records): (download)
>5vjyC (C:)
hmstpqlmrvkklsefailpvrssqfaagfdlasaydyvvpargkclvktdlavavphgy
ygrvaprsglavknfidvgagvvdsdyrgnlgvllfnhgdedfkiargdriaqfvieqia
lpdivevddlde
- Chain 'D':
Sequence, based on SEQRES records: (download)
>5vjyD (D:)
mahhhhhhmstpqlmrvkklsefailpvrssqfaagfdlasaydyvvpargkclvktdla
vavphgyygrvaprsglavknfidvgagvvdsdyrgnlgvllfnhgdedfkiargdriaq
fvieqialpdivevddldetergaggfgstgvksk
Sequence, based on observed residues (ATOM records): (download)
>5vjyD (D:)
hmstpqlmrvkklsefailpvrssqfaagfdlasaydyvvpargkclvktdlavavphgy
ygrvaprsglavknfidvgagvvdsdyrgnlgvllfnhgdedfkiargdriaqfvieqia
lpdivevddld
- Chain 'E':
Sequence, based on SEQRES records: (download)
>5vjyE (E:)
mahhhhhhmstpqlmrvkklsefailpvrssqfaagfdlasaydyvvpargkclvktdla
vavphgyygrvaprsglavknfidvgagvvdsdyrgnlgvllfnhgdedfkiargdriaq
fvieqialpdivevddldetergaggfgstgvksk
Sequence, based on observed residues (ATOM records): (download)
>5vjyE (E:)
hmstpqlmrvkklsefailpvrssqfaagfdlasaydyvvpargkclvktdlavavphgy
ygrvaprsglavknfidvgagvvdsdyrgnlgvllfnhgdedfkiargdriaqfvieqia
lpdivevddlde