PDB entry 5v9h

View 5v9h on RCSB PDB site
Description: Structure of the H477R variant of rat cytosolic PEPCK in complex with phosphoglycolate and GDP.
Class: lyase
Keywords: phosphoenolpyruvate carboxykinase, LYASE
Deposited on 2017-03-23, released 2017-04-12
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-01-08, with a file datestamp of 2020-01-03.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: N/A
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
    Species: Rattus norvegicus [TaxId:10116]
    Gene: PCK1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P07379 (Start-621)
      • engineered mutation (476)
    Domains in SCOPe 2.08: d5v9ha1, d5v9ha2
  • Chain 'B':
    Compound: Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
    Species: Rattus norvegicus [TaxId:10116]
    Gene: PCK1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P07379 (Start-621)
      • engineered mutation (476)
    Domains in SCOPe 2.08: d5v9hb1, d5v9hb2
  • Heterogens: 1PE, MN, NA, GDP, PGA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5v9hA (A:)
mppqlhngldfsakviqgsldslpqevrkfvegnaqlcqpeyihicdgseeeygrllahm
qeegvirklkkydncwlaltdprdvariesktviitqeqrdtvpipksgqsqlgrwmsee
dfekafnarfpgcmkgrtmyvipfsmgplgsplakigieltdspyvvasmrimtrmgtsv
lealgdgefikclhsvgcplplkkplvnnwacnpeltliahlpdrreiisfgsgyggnsl
lgkkcfalriasrlakeegwlaehmlilgitnpegkkkylaaafpsacgktnlammnptl
pgwkvecvgddiawmkfdaqgnlrainpengffgvapgtsvktnpnaiktiqkntiftnv
aetsdggvywegideplapgvtitswknkewrpqdeepcahpnsrfctpasqcpiidpaw
espegvpiegiifggrrpagvplvyealswqhgvfvgaamrseataaaehkgkvimrdpf
amrpffgynfgkylahwlsmahrpaaklpkifhvnwfrkdkngkflwpgfgensrvlewm
fgriegedsakltpigyvpkedalnlkglgdvnveelfgiskefwekeveeidkyledqv
nadlpyeierelralkqrisqm

    Sequence, based on observed residues (ATOM records): (download) 
    >5v9hA (A:)
ngldfsakviqgsldslpqevrkfvegnaqlcqpeyihicdgseeeygrllahmqeegvi
rklkkydncwlaltdprdvariesktviitqeqrdtvpipksgqsqlgrwmseedfekaf
narfpgcmkgrtmyvipfsmgplgsplakigieltdspyvvasmrimtrmgtsvlealgd
gefikclhsvgcplplkkplvnnwacnpeltliahlpdrreiisfgsgyggnsllgkkcf
alriasrlakeegwlaehmlilgitnpegkkkylaaafpsacgktnlammnptlpgwkve
cvgddiawmkfdaqgnlrainpengffgvapgtsvktnpnaiktiqkntiftnvaetsdg
gvywegideplapgvtitswknkewrpqdeepcahpnsrfctpasqcpiidpawespegv
piegiifggrrpagvplvyealswqhgvfvgaamrseataaaehkgkvimrdpfamrpff
gynfgkylahwlsmahrpaaklpkifhvnwfrkflwpgfgensrvlewmfgriegedsak
ltpigyvpkedalnlkglgdvnveelfgiskefwekeveeidkyledqvnadlpyeiere
lralkqrisqm

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5v9hB (B:)
mppqlhngldfsakviqgsldslpqevrkfvegnaqlcqpeyihicdgseeeygrllahm
qeegvirklkkydncwlaltdprdvariesktviitqeqrdtvpipksgqsqlgrwmsee
dfekafnarfpgcmkgrtmyvipfsmgplgsplakigieltdspyvvasmrimtrmgtsv
lealgdgefikclhsvgcplplkkplvnnwacnpeltliahlpdrreiisfgsgyggnsl
lgkkcfalriasrlakeegwlaehmlilgitnpegkkkylaaafpsacgktnlammnptl
pgwkvecvgddiawmkfdaqgnlrainpengffgvapgtsvktnpnaiktiqkntiftnv
aetsdggvywegideplapgvtitswknkewrpqdeepcahpnsrfctpasqcpiidpaw
espegvpiegiifggrrpagvplvyealswqhgvfvgaamrseataaaehkgkvimrdpf
amrpffgynfgkylahwlsmahrpaaklpkifhvnwfrkdkngkflwpgfgensrvlewm
fgriegedsakltpigyvpkedalnlkglgdvnveelfgiskefwekeveeidkyledqv
nadlpyeierelralkqrisqm

    Sequence, based on observed residues (ATOM records): (download) 
    >5v9hB (B:)
ldfsakviqgsldslpqevrkfvegnaqlcqpeyihicdgseeeygrllahmqeegvirk
lkkydncwlaltdprdvariesktviitqeqrdtvpipksgqsqlgrwmseedfekafna
rfpgcmkgrtmyvipfsmgplgsplakigieltdspyvvasmrimtrmgtsvlealgdge
fikclhsvgcplplkkplvnnwacnpeltliahlpdrreiisfgsgyggnsllgkkcfal
riasrlakeegwlaehmlilgitnpegkkkylaaafpsacgktnlammnptlpgwkvecv
gddiawmkfdaqgnlrainpengffgvapgtsvktnpnaiktiqkntiftnvaetsdggv
ywegideplapgvtitswknkewrpqdeepcahpnsrfctpasqcpiidpawespegvpi
egiifggrrpagvplvyealswqhgvfvgaamrseataaaehkgkvimrdpfamrpffgy
nfgkylahwlsmahrpaaklpkifhvnwfrkflwpgfgensrvlewmfgriegedsaklt
pigyvpkedalnlkglgdvnveelfgiskefwekeveeidkyledqvnadlpyeierelr
alkqrisqm