PDB entry 5v85

View 5v85 on RCSB PDB site
Description: The crystal structure of the protein of DegV family COG1307 from Ruminococcus gnavus ATCC 29149 (alternative refinement of PDB 3JR7 with Vaccenic acid)
Class: transport protein
Keywords: DEGV, GUT MICROBIOME, STRUCTURAL GENOMICS, PSI-2, C18:1, Vaccenic acid, TRANSPORT PROTEIN
Deposited on 2017-03-21, released 2018-11-21
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-11-21, with a file datestamp of 2018-11-16.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: EDD domain protein, DegV family
    Species: Ruminococcus gnavus ATCC 29149 [TaxId:411470]
    Gene: RUMGNA_03254
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5v85a_
  • Chain 'B':
    Compound: EDD domain protein, DegV family
    Species: Ruminococcus gnavus ATCC 29149 [TaxId:411470]
    Gene: RUMGNA_03254
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5v85b_
  • Heterogens: VCA, PO4, NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5v85A (A:)
mkttynrwwkkkvwfgrkdmsykvivdscgeftpemkadggfehvalgiqiedtqwtddd
slkqeelllkiaestscaktscpsperymesyhcdaeriyvvtlsaelsgsynsavlgkn
lyeeeygekqihvfnsrsasvgetlialkvqqcekagmtfeevvesvecyieeqhtyfvl
enldtlrkngrltgikslvagalnikpimgstpqgticqkekargmkkalvkmadcvaad
vvnagdkilaiahcnceerakevqrllkerfavkssfivdtsgistvyandggiivvv

    Sequence, based on observed residues (ATOM records): (download) 
    >5v85A (A:)
dmsykvivdscgeftpemkadggfehvalgiqiedtqwtdddslkqeelllkiaestsca
ktscpsperymesyhcdaeriyvvtlsaelsgsynsavlgknlyeeeygekqihvfnsrs
asvgetlialkvqqcekagmtfeevvesvecyieeqhtyfvlenldtlrkngrltgiksa
galnikpimgstpqgticqkekargmkkalvkmadcvaadvvnagdkilaiahcnceera
kevqrllkerfavkssfivdtsgistvyandggiivvv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5v85B (B:)
mkttynrwwkkkvwfgrkdmsykvivdscgeftpemkadggfehvalgiqiedtqwtddd
slkqeelllkiaestscaktscpsperymesyhcdaeriyvvtlsaelsgsynsavlgkn
lyeeeygekqihvfnsrsasvgetlialkvqqcekagmtfeevvesvecyieeqhtyfvl
enldtlrkngrltgikslvagalnikpimgstpqgticqkekargmkkalvkmadcvaad
vvnagdkilaiahcnceerakevqrllkerfavkssfivdtsgistvyandggiivvv

    Sequence, based on observed residues (ATOM records): (download) 
    >5v85B (B:)
kdmsykvivdscgeftpemkadggfehvalgiqiedtqwtdddslkqeelllkiaestsc
aktscpsperymesyhcdaeriyvvtlsaelsgsynsavlgknlyeeeygekqihvfnsr
sasvgetlialkvqqcekagmtfeevvesvecyieeqhtyfvlenldtlrkngrltgiks
lvalnikpimgstpqgticqkekargmkkalvkmadcvaadvvnagdkilaiahcnceer
akevqrllkerfavkssfivdtsgistvyandggiivvv