PDB entry 5v4m

View 5v4m on RCSB PDB site
Description: Structure of HLA-DR15 with bound alpha3(135-145) peptide
Class: immune system
Keywords: HLA-DR, immune complex, antigen presenation, IMMUNE SYSTEM
Deposited on 2017-03-10, released 2017-05-03
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-05-24, with a file datestamp of 2017-05-19.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hla-dra1
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-DRA, HLA-DRA1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5v4ma1, d5v4ma2
  • Chain 'C':
    Compound: alpha3(135-145)-HLA-DRB1*15:01
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-DRB1, HLA-DRB2
    Database cross-references and differences (RAF-indexed):
    • PDB 5V4M (0-10)
    • Uniprot P01911 (Start-215)
  • Chain 'D':
    Compound: hla-dra1
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-DRA, HLA-DRA1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5v4md1, d5v4md2
  • Chain 'F':
    Compound: alpha3(135-145)-HLA-DRB1*15:01
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-DRB1, HLA-DRB2
    Database cross-references and differences (RAF-indexed):
    • PDB 5V4M (0-10)
    • Uniprot P01911 (Start-215)
  • Chain 'G':
    Compound: hla-dra1
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-DRA, HLA-DRA1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5v4mg1, d5v4mg2
  • Chain 'I':
    Compound: alpha3(135-145)-HLA-DRB1*15:01
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-DRB1, HLA-DRB2
    Database cross-references and differences (RAF-indexed):
    • PDB 5V4M (0-10)
    • Uniprot P01911 (Start-215)
  • Chain 'J':
    Compound: hla-dra1
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-DRA, HLA-DRA1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5v4mj1, d5v4mj2
  • Chain 'L':
    Compound: alpha3(135-145)-HLA-DRB1*15:01
    Species: Homo sapiens [TaxId:9606]
    Gene: HLA-DRB1, HLA-DRB2
    Database cross-references and differences (RAF-indexed):
    • PDB 5V4M (0-10)
    • Uniprot P01911 (Start-215)
  • Heterogens: NAG, FUC, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5v4mA (A:)
    ikeehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgal
    aniavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvt
    wlrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwef
    dtsgddddk
    

    Sequence, based on observed residues (ATOM records): (download)
    >5v4mA (A:)
    ehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgalani
    avdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvtwlr
    ngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwefd
    

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >5v4mD (D:)
    ikeehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgal
    aniavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvt
    wlrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwef
    dtsgddddk
    

    Sequence, based on observed residues (ATOM records): (download)
    >5v4mD (D:)
    ehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgalani
    avdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvtwlr
    ngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwefd
    

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >5v4mG (G:)
    ikeehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgal
    aniavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvt
    wlrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwef
    dtsgddddk
    

    Sequence, based on observed residues (ATOM records): (download)
    >5v4mG (G:)
    ehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgalani
    avdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvtwlr
    ngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwefd
    

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    Sequence, based on SEQRES records: (download)
    >5v4mJ (J:)
    ikeehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgal
    aniavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvt
    wlrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwef
    dtsgddddk
    

    Sequence, based on observed residues (ATOM records): (download)
    >5v4mJ (J:)
    ehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgalani
    avdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvtwlr
    ngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwefd
    

  • Chain 'L':
    No sequence available.