PDB entry 5v1y

View 5v1y on RCSB PDB site
Description: Crystal structure of the ternary RPN13 PRU-RPN2 (940-953)-ubiquitin complex
Class: protein binding
Keywords: RPN13, proteasome, RPN2, ubiquitin, PROTEIN BINDING
Deposited on 2017-03-02, released 2017-05-03
The last revision prior to the SCOPe 2.06 freeze date was dated 2017-05-03, with a file datestamp of 2017-04-28.
Experiment type: XRAY
Resolution: 1.42 Å
R-factor: N/A
AEROSPACI score: 0.53 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Proteasomal ubiquitin receptor ADRM1
    Species: Homo sapiens [TaxId:9606]
    Gene: Adrm1, Gp110
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q16186 (1-End)
      • expression tag (0)
  • Chain 'B':
    Compound: Proteasomal ubiquitin receptor ADRM1
    Species: Homo sapiens [TaxId:9606]
    Gene: Adrm1, Gp110
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5v1yc_
  • Chain 'D':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5v1yd_
  • Chain 'E':
    Compound: 26S proteasome non-ATPase regulatory subunit 1
    Species: Homo sapiens [TaxId:9606]
    Gene: PSMD1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q99460 (2-End)
      • expression tag (0-1)
  • Chain 'F':
    Compound: 26S proteasome non-ATPase regulatory subunit 1
    Species: Homo sapiens [TaxId:9606]
    Gene: PSMD1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q99460 (2-End)
      • expression tag (1)
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >5v1yC (C:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >5v1yC (C:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlr
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >5v1yD (D:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >5v1yD (D:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrl
    

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.