PDB entry 5ulk

View 5ulk on RCSB PDB site
Description: Crystal Structure of RNF165 in complex with a UbcH5b~Ub conjugate
Class: transferase
Keywords: Open conformation, Backside, Isopeptide-linked, TRANSFERASE
Deposited on 2017-01-24, released 2017-06-07
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-09-27, with a file datestamp of 2017-09-22.
Experiment type: XRAY
Resolution: 2.38 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ubiquitin-conjugating enzyme e2 d2
    Species: Homo sapiens [TaxId:9606]
    Gene: UBE2D2, PUBC1, UBC4, UBC5B, UBCH4, UBCH5B
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62837 (5-151)
      • engineered mutation (25)
      • engineered mutation (89)
      • engineered mutation (111)
      • engineered mutation (115)
    Domains in SCOPe 2.07: d5ulka_
  • Chain 'B':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5ulkb_
  • Chain 'C':
    Compound: E3 ubiquitin-protein ligase RNF165
    Species: Homo sapiens [TaxId:9606]
    Gene: RNF165
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6ZSG1
      • engineered mutation (58)
  • Heterogens: ZN

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5ulkA (A:)
gplgsmalkrihkelndlardppaqssagpvgddmfhwqatimgpndspyqggvffltih
fptdypfkppkvafttriyhpninsngsikldilrsqwspaltiskvllsissllsdpnp
ddplvpeiariyktdrekynriarewtqkyam

    Sequence, based on observed residues (ATOM records): (download) 
    >5ulkA (A:)
malkrihkelndlardppaqssagpvgddmfhwqatimgpndspyqggvffltihfptdy
pfkppkvafttriyhpninsngsikldilrsqwspaltiskvllsissllsdpnpddplv
peiariyktdrekynriarewtqkyam

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5ulkB (B:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >5ulkB (B:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlr

  • Chain 'C':
    No sequence available.