PDB entry 5ulf

View 5ulf on RCSB PDB site
Description: Crystal Structure of a UbcH5b~Ub conjugate
Class: transferase/signaling protein
Keywords: Open conformation, Isopeptide-linked, TRANSFERASE-SIGNALING PROTEIN complex
Deposited on 2017-01-24, released 2017-06-07
The last revision prior to the SCOPe 2.06 freeze date was dated 2017-06-07, with a file datestamp of 2017-06-02.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ubiquitin-conjugating enzyme e2 d2
    Species: Homo sapiens [TaxId:9606]
    Gene: UBE2D2, PUBC1, UBC4, UBC5B, UBCH4, UBCH5B
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62837 (5-151)
      • expression tag (1-4)
      • engineered mutation (25-26)
      • engineered mutation (89)
      • engineered mutation (111)
      • engineered mutation (115)
    Domains in SCOPe 2.06: d5ulfa1, d5ulfa2
  • Chain 'B':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5ulfb_
  • Chain 'C':
    Compound: ubiquitin-conjugating enzyme e2 d2
    Species: Homo sapiens [TaxId:9606]
    Gene: UBE2D2, PUBC1, UBC4, UBC5B, UBCH4, UBCH5B
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62837 (5-151)
      • expression tag (1-4)
      • engineered mutation (25-26)
      • engineered mutation (89)
      • engineered mutation (111)
      • engineered mutation (115)
    Domains in SCOPe 2.06: d5ulfc1, d5ulfc2
  • Chain 'D':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5ulfd_
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5ulfA (A:)
    gplgsmalkrihkelndlardppaqsragpvgddmfhwqatimgpndspyqggvffltih
    fptdypfkppkvafttriyhpninsngsikldilrsqwspaltiskvllsissllsdpnp
    ddplvpeiariyktdrekynriarewtqkyam
    

    Sequence, based on observed residues (ATOM records): (download)
    >5ulfA (A:)
    plgsmalkrihkelndlardppaqsragpvgddmfhwqatimgpndspyqggvffltihf
    ptdypfkppkvafttriyhpninsngsikldilrsqwspaltiskvllsissllsdpnpd
    dplvpeiariyktdrekynriarewtqkyam
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5ulfB (B:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >5ulfC (C:)
    gplgsmalkrihkelndlardppaqsragpvgddmfhwqatimgpndspyqggvffltih
    fptdypfkppkvafttriyhpninsngsikldilrsqwspaltiskvllsissllsdpnp
    ddplvpeiariyktdrekynriarewtqkyam
    

    Sequence, based on observed residues (ATOM records): (download)
    >5ulfC (C:)
    plgsmalkrihkelndlardppaqsragpvgddmfhwqatimgpndspyqggvffltihf
    ptdypfkppkvafttriyhpninsngsikldilrsqwspaltiskvllsissllsdpnpd
    dplvpeiariyktdrekynriarewtqkyam
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5ulfD (D:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg