PDB entry 5ufc

View 5ufc on RCSB PDB site
Description: Crystal Structure of Variable Lymphocyte Receptor (VLR) Tn4-22 with H-trisaccharide bound
Class: immune system
Keywords: variable lymphocyte receptors, VLR, leucine-rich repeat, LRR, adaptive immunity, immune system, sea lamprey, jawless fish, receptor, glycan binding, glycan receptor
Deposited on 2017-01-04, released 2017-10-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-09.
Experiment type: XRAY
Resolution: 1.89 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Tn4-22
    Species: Petromyzon marinus [TaxId:7757]
    Database cross-references and differences (RAF-indexed):
    • PDB 5UFC (Start-247)
    Domains in SCOPe 2.08: d5ufca_
  • Chain 'B':
    Compound: Tn4-22
    Species: Petromyzon marinus [TaxId:7757]
    Database cross-references and differences (RAF-indexed):
    • PDB 5UFC (Start-247)
    Domains in SCOPe 2.08: d5ufcb_
  • Chain 'C':
    Compound: Tn4-22
    Species: Petromyzon marinus [TaxId:7757]
    Database cross-references and differences (RAF-indexed):
    • PDB 5UFC (Start-247)
    Domains in SCOPe 2.08: d5ufcc_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5ufcA (A:)
hhhhhhggcpsqcscrgtyvdcdsrrlasvpagiptnvqilnlynnqitnlepgvfdrlv
nlqklylsgnqlqalpvgvfdklsqltflsldenkltalpngvfdklteltylnlntnql
talpegvfdrlvhlkellmccnkltelprgierlthlthlaldqnqlksiphgafdrlss
lthaylfgnpwdcecrdimylrnwvadhtsivmrwdgkavndpdsakcagtntpvravte
astspskc

    Sequence, based on observed residues (ATOM records): (download) 
    >5ufcA (A:)
cpsqcscrgtyvdcdsrrlasvpagiptnvqilnlynnqitnlepgvfdrlvnlqklyls
gnqlqalpvgvfdklsqltflsldenkltalpngvfdklteltylnlntnqltalpegvf
drlvhlkellmccnkltelprgierlthlthlaldqnqlksiphgafdrlsslthaylfg
npwdcecrdimylrnwvadhtsivmrwdgkavndpdsakcagtntpvravteastspskc

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5ufcB (B:)
hhhhhhggcpsqcscrgtyvdcdsrrlasvpagiptnvqilnlynnqitnlepgvfdrlv
nlqklylsgnqlqalpvgvfdklsqltflsldenkltalpngvfdklteltylnlntnql
talpegvfdrlvhlkellmccnkltelprgierlthlthlaldqnqlksiphgafdrlss
lthaylfgnpwdcecrdimylrnwvadhtsivmrwdgkavndpdsakcagtntpvravte
astspskc

    Sequence, based on observed residues (ATOM records): (download) 
    >5ufcB (B:)
cpsqcscrgtyvdcdsrrlasvpagiptnvqilnlynnqitnlepgvfdrlvnlqklyls
gnqlqalpvgvfdklsqltflsldenkltalpngvfdklteltylnlntnqltalpegvf
drlvhlkellmccnkltelprgierlthlthlaldqnqlksiphgafdrlsslthaylfg
npwdcecrdimylrnwvadhtsivmrwdgkavndpdsakcagtntpvravteastspskc

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5ufcC (C:)
hhhhhhggcpsqcscrgtyvdcdsrrlasvpagiptnvqilnlynnqitnlepgvfdrlv
nlqklylsgnqlqalpvgvfdklsqltflsldenkltalpngvfdklteltylnlntnql
talpegvfdrlvhlkellmccnkltelprgierlthlthlaldqnqlksiphgafdrlss
lthaylfgnpwdcecrdimylrnwvadhtsivmrwdgkavndpdsakcagtntpvravte
astspskc

    Sequence, based on observed residues (ATOM records): (download) 
    >5ufcC (C:)
cpsqcscrgtyvdcdsrrlasvpagiptnvqilnlynnqitnlepgvfdrlvnlqklyls
gnqlqalpvgvfdklsqltflsldenkltalpngvfdklteltylnlntnqltalpegvf
drlvhlkellmccnkltelprgierlthlthlaldqnqlksiphgafdrlsslthaylfg
npwdcecrdimylrnwvadhtsivmrwdgkavndpdsakcagtntpvravteastspskc