PDB entry 5uf1

View 5uf1 on RCSB PDB site
Description: Crystal Structure of Variable Lymphocyte Receptor (VLR) O13 in complex with H-trisaccharide
Class: immune system
Keywords: variable lymphocyte receptors, VLR, leucine-rich repeat, LRR, adaptive immunity, immune system, sea lamprey, jawless fish, receptor, glycan binding, glycan receptor
Deposited on 2017-01-03, released 2017-10-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-09.
Experiment type: XRAY
Resolution: 2.03 Å
R-factor: N/A
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: o13
    Species: Petromyzon marinus [TaxId:7757]
    Database cross-references and differences (RAF-indexed):
    • PDB 5UF1 (Start-246)
    Domains in SCOPe 2.08: d5uf1a_
  • Chain 'B':
    Compound: o13
    Species: Petromyzon marinus [TaxId:7757]
    Database cross-references and differences (RAF-indexed):
    • PDB 5UF1 (Start-246)
    Domains in SCOPe 2.08: d5uf1b_
  • Heterogens: CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5uf1A (A:)
hhhhhhcpsqcscsgttvnckskslasvpagiptttrvlylndnqitklepgvfdrlvnl
qtlwlnnnqltslpaglfdsltqltilaldsnqlqalpvgvfgrlvdlqqlylgsnqlsa
lpsavfdrlvhlkellmccnkltelprgierlthlthlaldqnqlksiphgafdrlsslt
haylfgnpwdcecrdimylrnwvadhtsivmrwdgkavndpdsakcagtntpvravteas
tspskcp

    Sequence, based on observed residues (ATOM records): (download) 
    >5uf1A (A:)
cpsqcscsgttvnckskslasvpagiptttrvlylndnqitklepgvfdrlvnlqtlwln
nnqltslpaglfdsltqltilaldsnqlqalpvgvfgrlvdlqqlylgsnqlsalpsavf
drlvhlkellmccnkltelprgierlthlthlaldqnqlksiphgafdrlsslthaylfg
npwdcecrdimylrnwvadhtsivmrwdgkavndpdsakcagtntpvravteastspskc
p

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5uf1B (B:)
hhhhhhcpsqcscsgttvnckskslasvpagiptttrvlylndnqitklepgvfdrlvnl
qtlwlnnnqltslpaglfdsltqltilaldsnqlqalpvgvfgrlvdlqqlylgsnqlsa
lpsavfdrlvhlkellmccnkltelprgierlthlthlaldqnqlksiphgafdrlsslt
haylfgnpwdcecrdimylrnwvadhtsivmrwdgkavndpdsakcagtntpvravteas
tspskcp

    Sequence, based on observed residues (ATOM records): (download) 
    >5uf1B (B:)
cpsqcscsgttvnckskslasvpagiptttrvlylndnqitklepgvfdrlvnlqtlwln
nnqltslpaglfdsltqltilaldsnqlqalpvgvfgrlvdlqqlylgsnqlsalpsavf
drlvhlkellmccnkltelprgierlthlthlaldqnqlksiphgafdrlsslthaylfg
npwdcecrdimylrnwvadhtsivmrwdgkavndpdsakcagtntpvravteastspskc
p